Gene : Seita.4G176500 S. italica v2.2
Defline:  (1 of 1) PTHR23105//PTHR23105:SF51 - RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Genomic Order:  1765
Name:  ? Seita.4G176500 Secondary Identifier:  ? PAC:32706319
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G176500 0.5kb upstream 0.5kb upstream 6760 true scaffold_4: 28411255-28418014 Setaria italica
Seita.4G176500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 28411255-28411754 Setaria italica
Seita.4G176500 0.5kb downstream 0.5kb downstream 6760 true scaffold_4: 28411755-28418514 Setaria italica
Seita.4G176500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 28418015-28418514 Setaria italica
Seita.4G176500 1.0kb upstream 1.0kb upstream 7260 true scaffold_4: 28410755-28418014 Setaria italica
Seita.4G176500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 28410755-28411754 Setaria italica
Seita.4G176500 1.0kb downstream 1.0kb downstream 7260 true scaffold_4: 28411755-28419014 Setaria italica
Seita.4G176500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 28418015-28419014 Setaria italica
Seita.4G176500 2.0kb upstream 2.0kb upstream 8260 true scaffold_4: 28409755-28418014 Setaria italica
Seita.4G176500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 28409755-28411754 Setaria italica
Seita.4G176500 2.0kb downstream 2.0kb downstream 8260 true scaffold_4: 28411755-28420014 Setaria italica
Seita.4G176500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 28418015-28420014 Setaria italica
Seita.4G176500 5.0kb upstream 5.0kb upstream 11260 true scaffold_4: 28406755-28418014 Setaria italica
Seita.4G176500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 28406755-28411754 Setaria italica
Seita.4G176500 5.0kb downstream 5.0kb downstream 11260 true scaffold_4: 28411755-28423014 Setaria italica
Seita.4G176500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 28418015-28423014 Setaria italica
Seita.4G176500 10.0kb upstream 10.0kb upstream 16260 true scaffold_4: 28401755-28418014 Setaria italica
Seita.4G176500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 28401755-28411754 Setaria italica
Seita.4G176500 10.0kb downstream 10.0kb downstream 16260 true scaffold_4: 28411755-28428014 Setaria italica
Seita.4G176500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 28418015-28428014 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184352 5267 Panicoideae View MSA
124589183 5269 Grass View MSA
122043496 5273 Angiosperm View MSA
121348791 5274 Embryophyte View MSA
123427528 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.012        
cufflinks 4.623        
cufflinks 1.561        
cufflinks 0.56       Low
cufflinks 0.842       Low
cufflinks 5.802       High
cufflinks 1.855        
cufflinks 3.614        
cufflinks 2.358        
cufflinks 3.094        
cufflinks 3.273        
cufflinks 4.647        
cufflinks 2.361        
cufflinks 2.742        
cufflinks 4.789        
cufflinks 1.194       Low
cufflinks 6.712       High
cufflinks 1.154       Low
cufflinks 0.905       Low
cufflinks 5.8       High

0 Strain