Gene : Seita.4G185100 S. italica v2.2
Defline:  (1 of 6) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  1851
Name:  ? Seita.4G185100 Secondary Identifier:  ? PAC:32708141
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G185100 0.5kb upstream 0.5kb upstream 7666 true scaffold_4: 30286324-30293989 Setaria italica
Seita.4G185100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30286324-30286823 Setaria italica
Seita.4G185100 0.5kb downstream 0.5kb downstream 7666 true scaffold_4: 30286824-30294489 Setaria italica
Seita.4G185100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30293990-30294489 Setaria italica
Seita.4G185100 1.0kb upstream 1.0kb upstream 8166 true scaffold_4: 30285824-30293989 Setaria italica
Seita.4G185100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30285824-30286823 Setaria italica
Seita.4G185100 1.0kb downstream 1.0kb downstream 8166 true scaffold_4: 30286824-30294989 Setaria italica
Seita.4G185100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30293990-30294989 Setaria italica
Seita.4G185100 2.0kb upstream 2.0kb upstream 9166 true scaffold_4: 30284824-30293989 Setaria italica
Seita.4G185100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30284824-30286823 Setaria italica
Seita.4G185100 2.0kb downstream 2.0kb downstream 9166 true scaffold_4: 30286824-30295989 Setaria italica
Seita.4G185100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30293990-30295989 Setaria italica
Seita.4G185100 5.0kb upstream 5.0kb upstream 12166 true scaffold_4: 30281824-30293989 Setaria italica
Seita.4G185100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30281824-30286823 Setaria italica
Seita.4G185100 5.0kb downstream 5.0kb downstream 12166 true scaffold_4: 30286824-30298989 Setaria italica
Seita.4G185100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30293990-30298989 Setaria italica
Seita.4G185100 10.0kb upstream 10.0kb upstream 17166 true scaffold_4: 30276824-30293989 Setaria italica
Seita.4G185100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30276824-30286823 Setaria italica
Seita.4G185100 10.0kb downstream 10.0kb downstream 17166 true scaffold_4: 30286824-30303989 Setaria italica
Seita.4G185100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30293990-30303989 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179651 5267 Panicoideae View MSA
124582889 5269 Grass View MSA
122045942 5273 Angiosperm View MSA
121346195 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.054        
cufflinks 3.349        
cufflinks 1.168        
cufflinks 0.712       Low
cufflinks 0.387       Low
cufflinks 3.197        
cufflinks 2.539        
cufflinks 1.185        
cufflinks 2.231        
cufflinks 3.446        
cufflinks 6.282       High
cufflinks 5.461        
cufflinks 6.948       High
cufflinks 2.465        
cufflinks 9.783       High
cufflinks 1.102       Low
cufflinks 4.208        
cufflinks 1.783        
cufflinks 1.803        
cufflinks 4.818        

0 Strain