Gene : Seita.4G099700 S. italica v2.2
Defline:  (1 of 2) PTHR12526//PTHR12526:SF371 - GLYCOSYLTRANSFERASE Genomic Order:  997
Name:  ? Seita.4G099700 Secondary Identifier:  ? PAC:32708013
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYCOGENSYNTH-PWY Setaria italica pathologic  
Sitalica PWY-622 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G099700 0.5kb upstream 0.5kb upstream 4710 true scaffold_4: 8710074-8714783 Setaria italica
Seita.4G099700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 8710074-8710573 Setaria italica
Seita.4G099700 0.5kb downstream 0.5kb downstream 4710 true scaffold_4: 8710574-8715283 Setaria italica
Seita.4G099700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 8714784-8715283 Setaria italica
Seita.4G099700 1.0kb upstream 1.0kb upstream 5210 true scaffold_4: 8709574-8714783 Setaria italica
Seita.4G099700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 8709574-8710573 Setaria italica
Seita.4G099700 1.0kb downstream 1.0kb downstream 5210 true scaffold_4: 8710574-8715783 Setaria italica
Seita.4G099700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 8714784-8715783 Setaria italica
Seita.4G099700 2.0kb upstream 2.0kb upstream 6210 true scaffold_4: 8708574-8714783 Setaria italica
Seita.4G099700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 8708574-8710573 Setaria italica
Seita.4G099700 2.0kb downstream 2.0kb downstream 6210 true scaffold_4: 8710574-8716783 Setaria italica
Seita.4G099700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 8714784-8716783 Setaria italica
Seita.4G099700 5.0kb upstream 5.0kb upstream 9210 true scaffold_4: 8705574-8714783 Setaria italica
Seita.4G099700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 8705574-8710573 Setaria italica
Seita.4G099700 5.0kb downstream 5.0kb downstream 9210 true scaffold_4: 8710574-8719783 Setaria italica
Seita.4G099700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 8714784-8719783 Setaria italica
Seita.4G099700 10.0kb upstream 10.0kb upstream 14210 true scaffold_4: 8700574-8714783 Setaria italica
Seita.4G099700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 8700574-8710573 Setaria italica
Seita.4G099700 10.0kb downstream 10.0kb downstream 14210 true scaffold_4: 8710574-8724783 Setaria italica
Seita.4G099700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 8714784-8724783 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178854 5267 Panicoideae View MSA
124577600 5269 Grass View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.369        
cufflinks 0.922       High
cufflinks 0.065     Low  
cufflinks 0.059     Low  
cufflinks 0.142        
cufflinks 1.167       High
cufflinks 0.466        
cufflinks 0.28        
cufflinks 0.5       High
cufflinks 0.103     Low  
cufflinks 0.102     Low  
cufflinks 0.047     Low  
cufflinks 0.072     Low  
cufflinks 0.145        
cufflinks 0.034     Low Low
cufflinks 0.282        
cufflinks 0.02     Low Low
cufflinks 0.726       High
cufflinks 0.043     Low Low
cufflinks 0.073     Low  

0 Strain