Gene : Seita.4G103100 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1031
Name:  ? Seita.4G103100 Secondary Identifier:  ? PAC:32707893
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G103100 0.5kb upstream 0.5kb upstream 2292 true scaffold_4: 9313011-9315302 Setaria italica
Seita.4G103100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9314803-9315302 Setaria italica
Seita.4G103100 0.5kb downstream 0.5kb downstream 2292 true scaffold_4: 9312511-9314802 Setaria italica
Seita.4G103100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9312511-9313010 Setaria italica
Seita.4G103100 1.0kb upstream 1.0kb upstream 2792 true scaffold_4: 9313011-9315802 Setaria italica
Seita.4G103100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9314803-9315802 Setaria italica
Seita.4G103100 1.0kb downstream 1.0kb downstream 2792 true scaffold_4: 9312011-9314802 Setaria italica
Seita.4G103100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9312011-9313010 Setaria italica
Seita.4G103100 2.0kb upstream 2.0kb upstream 3792 true scaffold_4: 9313011-9316802 Setaria italica
Seita.4G103100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9314803-9316802 Setaria italica
Seita.4G103100 2.0kb downstream 2.0kb downstream 3792 true scaffold_4: 9311011-9314802 Setaria italica
Seita.4G103100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9311011-9313010 Setaria italica
Seita.4G103100 5.0kb upstream 5.0kb upstream 6792 true scaffold_4: 9313011-9319802 Setaria italica
Seita.4G103100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9314803-9319802 Setaria italica
Seita.4G103100 5.0kb downstream 5.0kb downstream 6792 true scaffold_4: 9308011-9314802 Setaria italica
Seita.4G103100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9308011-9313010 Setaria italica
Seita.4G103100 10.0kb upstream 10.0kb upstream 11792 true scaffold_4: 9313011-9324802 Setaria italica
Seita.4G103100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9314803-9324802 Setaria italica
Seita.4G103100 10.0kb downstream 10.0kb downstream 11792 true scaffold_4: 9303011-9314802 Setaria italica
Seita.4G103100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9303011-9313010 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030324 5273 Angiosperm View MSA
122185301 5267 Panicoideae View MSA
124586698 5269 Grass View MSA
121299513 5274 Embryophyte View MSA
123337376 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 0.525        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.612        
cufflinks 0.048     Low Low
cufflinks 1.037        
cufflinks 0.82        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.173        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.374        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.25       High

0 Strain