Gene : Seita.4G103300 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1033
Name:  ? Seita.4G103300 Secondary Identifier:  ? PAC:32709472
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G103300 0.5kb upstream 0.5kb upstream 2227 true scaffold_4: 9324026-9326252 Setaria italica
Seita.4G103300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9325753-9326252 Setaria italica
Seita.4G103300 0.5kb downstream 0.5kb downstream 2227 true scaffold_4: 9323526-9325752 Setaria italica
Seita.4G103300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9323526-9324025 Setaria italica
Seita.4G103300 1.0kb upstream 1.0kb upstream 2727 true scaffold_4: 9324026-9326752 Setaria italica
Seita.4G103300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9325753-9326752 Setaria italica
Seita.4G103300 1.0kb downstream 1.0kb downstream 2727 true scaffold_4: 9323026-9325752 Setaria italica
Seita.4G103300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9323026-9324025 Setaria italica
Seita.4G103300 2.0kb upstream 2.0kb upstream 3727 true scaffold_4: 9324026-9327752 Setaria italica
Seita.4G103300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9325753-9327752 Setaria italica
Seita.4G103300 2.0kb downstream 2.0kb downstream 3727 true scaffold_4: 9322026-9325752 Setaria italica
Seita.4G103300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9322026-9324025 Setaria italica
Seita.4G103300 5.0kb upstream 5.0kb upstream 6727 true scaffold_4: 9324026-9330752 Setaria italica
Seita.4G103300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9325753-9330752 Setaria italica
Seita.4G103300 5.0kb downstream 5.0kb downstream 6727 true scaffold_4: 9319026-9325752 Setaria italica
Seita.4G103300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9319026-9324025 Setaria italica
Seita.4G103300 10.0kb upstream 10.0kb upstream 11727 true scaffold_4: 9324026-9335752 Setaria italica
Seita.4G103300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9325753-9335752 Setaria italica
Seita.4G103300 10.0kb downstream 10.0kb downstream 11727 true scaffold_4: 9314026-9325752 Setaria italica
Seita.4G103300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9314026-9324025 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030324 5273 Angiosperm View MSA
122187079 5267 Panicoideae View MSA
124586698 5269 Grass View MSA
121299513 5274 Embryophyte View MSA
123337376 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.103     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.868        
cufflinks 0.012     Low Low
cufflinks 0.302        
cufflinks 0.309        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.957        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.515        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.571        

0 Strain