Gene : Seita.4G102900 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1029
Name:  ? Seita.4G102900 Secondary Identifier:  ? PAC:32709593
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G102900 0.5kb upstream 0.5kb upstream 1890 true scaffold_4: 9267148-9269037 Setaria italica
Seita.4G102900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9267148-9267647 Setaria italica
Seita.4G102900 0.5kb downstream 0.5kb downstream 1890 true scaffold_4: 9267648-9269537 Setaria italica
Seita.4G102900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9269038-9269537 Setaria italica
Seita.4G102900 1.0kb upstream 1.0kb upstream 2390 true scaffold_4: 9266648-9269037 Setaria italica
Seita.4G102900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9266648-9267647 Setaria italica
Seita.4G102900 1.0kb downstream 1.0kb downstream 2390 true scaffold_4: 9267648-9270037 Setaria italica
Seita.4G102900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9269038-9270037 Setaria italica
Seita.4G102900 2.0kb upstream 2.0kb upstream 3390 true scaffold_4: 9265648-9269037 Setaria italica
Seita.4G102900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9265648-9267647 Setaria italica
Seita.4G102900 2.0kb downstream 2.0kb downstream 3390 true scaffold_4: 9267648-9271037 Setaria italica
Seita.4G102900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9269038-9271037 Setaria italica
Seita.4G102900 5.0kb upstream 5.0kb upstream 6390 true scaffold_4: 9262648-9269037 Setaria italica
Seita.4G102900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9262648-9267647 Setaria italica
Seita.4G102900 5.0kb downstream 5.0kb downstream 6390 true scaffold_4: 9267648-9274037 Setaria italica
Seita.4G102900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9269038-9274037 Setaria italica
Seita.4G102900 10.0kb upstream 10.0kb upstream 11390 true scaffold_4: 9257648-9269037 Setaria italica
Seita.4G102900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9257648-9267647 Setaria italica
Seita.4G102900 10.0kb downstream 10.0kb downstream 11390 true scaffold_4: 9267648-9279037 Setaria italica
Seita.4G102900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9269038-9279037 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992518 5273 Angiosperm View MSA
122117209 5267 Panicoideae View MSA
124569390 5269 Grass View MSA
121262870 5274 Embryophyte View MSA
123301494 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.111     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.157     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.247        
cufflinks 0.073     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.445       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.221        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.565       High

0 Strain