Gene : Seita.4G102800 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1028
Name:  ? Seita.4G102800 Secondary Identifier:  ? PAC:32709625
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G102800 0.5kb upstream 0.5kb upstream 2212 true scaffold_4: 9206245-9208456 Setaria italica
Seita.4G102800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9207957-9208456 Setaria italica
Seita.4G102800 0.5kb downstream 0.5kb downstream 2212 true scaffold_4: 9205745-9207956 Setaria italica
Seita.4G102800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9205745-9206244 Setaria italica
Seita.4G102800 1.0kb upstream 1.0kb upstream 2712 true scaffold_4: 9206245-9208956 Setaria italica
Seita.4G102800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9207957-9208956 Setaria italica
Seita.4G102800 1.0kb downstream 1.0kb downstream 2712 true scaffold_4: 9205245-9207956 Setaria italica
Seita.4G102800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9205245-9206244 Setaria italica
Seita.4G102800 2.0kb upstream 2.0kb upstream 3712 true scaffold_4: 9206245-9209956 Setaria italica
Seita.4G102800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9207957-9209956 Setaria italica
Seita.4G102800 2.0kb downstream 2.0kb downstream 3712 true scaffold_4: 9204245-9207956 Setaria italica
Seita.4G102800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9204245-9206244 Setaria italica
Seita.4G102800 5.0kb upstream 5.0kb upstream 6712 true scaffold_4: 9206245-9212956 Setaria italica
Seita.4G102800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9207957-9212956 Setaria italica
Seita.4G102800 5.0kb downstream 5.0kb downstream 6712 true scaffold_4: 9201245-9207956 Setaria italica
Seita.4G102800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9201245-9206244 Setaria italica
Seita.4G102800 10.0kb upstream 10.0kb upstream 11712 true scaffold_4: 9206245-9217956 Setaria italica
Seita.4G102800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9207957-9217956 Setaria italica
Seita.4G102800 10.0kb downstream 10.0kb downstream 11712 true scaffold_4: 9196245-9207956 Setaria italica
Seita.4G102800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9196245-9206244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030324 5273 Angiosperm View MSA
122188527 5267 Panicoideae View MSA
124586698 5269 Grass View MSA
121299513 5274 Embryophyte View MSA
123337376 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low Low
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.112     Low  
cufflinks 0.008     Low Low
cufflinks 0.214        
cufflinks 1.145       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.511        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.297        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.567        

0 Strain