Gene : Seita.4G103000 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1030
Name:  ? Seita.4G103000 Secondary Identifier:  ? PAC:32706469
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G103000 0.5kb upstream 0.5kb upstream 2175 true scaffold_4: 9289197-9291371 Setaria italica
Seita.4G103000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9290872-9291371 Setaria italica
Seita.4G103000 0.5kb downstream 0.5kb downstream 2175 true scaffold_4: 9288697-9290871 Setaria italica
Seita.4G103000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9288697-9289196 Setaria italica
Seita.4G103000 1.0kb upstream 1.0kb upstream 2675 true scaffold_4: 9289197-9291871 Setaria italica
Seita.4G103000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9290872-9291871 Setaria italica
Seita.4G103000 1.0kb downstream 1.0kb downstream 2675 true scaffold_4: 9288197-9290871 Setaria italica
Seita.4G103000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9288197-9289196 Setaria italica
Seita.4G103000 2.0kb upstream 2.0kb upstream 3675 true scaffold_4: 9289197-9292871 Setaria italica
Seita.4G103000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9290872-9292871 Setaria italica
Seita.4G103000 2.0kb downstream 2.0kb downstream 3675 true scaffold_4: 9287197-9290871 Setaria italica
Seita.4G103000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9287197-9289196 Setaria italica
Seita.4G103000 5.0kb upstream 5.0kb upstream 6675 true scaffold_4: 9289197-9295871 Setaria italica
Seita.4G103000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9290872-9295871 Setaria italica
Seita.4G103000 5.0kb downstream 5.0kb downstream 6675 true scaffold_4: 9284197-9290871 Setaria italica
Seita.4G103000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9284197-9289196 Setaria italica
Seita.4G103000 10.0kb upstream 10.0kb upstream 11675 true scaffold_4: 9289197-9300871 Setaria italica
Seita.4G103000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9290872-9300871 Setaria italica
Seita.4G103000 10.0kb downstream 10.0kb downstream 11675 true scaffold_4: 9279197-9290871 Setaria italica
Seita.4G103000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9279197-9289196 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030324 5273 Angiosperm View MSA
122116143 5267 Panicoideae View MSA
124586698 5269 Grass View MSA
121299513 5274 Embryophyte View MSA
123337376 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low Low
cufflinks 0.521        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.375        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.875        
cufflinks 0.977        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.025        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.255        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.582        

0 Strain