Gene : Seita.4G104600 S. italica v2.2
Defline:  (1 of 1) PTHR11276 - DNA POLYMERASE TYPE-X FAMILY MEMBER Genomic Order:  1046
Name:  ? Seita.4G104600 Secondary Identifier:  ? PAC:32708026
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G104600 0.5kb upstream 0.5kb upstream 5053 true scaffold_4: 9472560-9477612 Setaria italica
Seita.4G104600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9477113-9477612 Setaria italica
Seita.4G104600 0.5kb downstream 0.5kb downstream 5053 true scaffold_4: 9472060-9477112 Setaria italica
Seita.4G104600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9472060-9472559 Setaria italica
Seita.4G104600 1.0kb upstream 1.0kb upstream 5553 true scaffold_4: 9472560-9478112 Setaria italica
Seita.4G104600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9477113-9478112 Setaria italica
Seita.4G104600 1.0kb downstream 1.0kb downstream 5553 true scaffold_4: 9471560-9477112 Setaria italica
Seita.4G104600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9471560-9472559 Setaria italica
Seita.4G104600 2.0kb upstream 2.0kb upstream 6553 true scaffold_4: 9472560-9479112 Setaria italica
Seita.4G104600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9477113-9479112 Setaria italica
Seita.4G104600 2.0kb downstream 2.0kb downstream 6553 true scaffold_4: 9470560-9477112 Setaria italica
Seita.4G104600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9470560-9472559 Setaria italica
Seita.4G104600 5.0kb upstream 5.0kb upstream 9553 true scaffold_4: 9472560-9482112 Setaria italica
Seita.4G104600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9477113-9482112 Setaria italica
Seita.4G104600 5.0kb downstream 5.0kb downstream 9553 true scaffold_4: 9467560-9477112 Setaria italica
Seita.4G104600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9467560-9472559 Setaria italica
Seita.4G104600 10.0kb upstream 10.0kb upstream 14553 true scaffold_4: 9472560-9487112 Setaria italica
Seita.4G104600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9477113-9487112 Setaria italica
Seita.4G104600 10.0kb downstream 10.0kb downstream 14553 true scaffold_4: 9462560-9477112 Setaria italica
Seita.4G104600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9462560-9472559 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190437 5267 Panicoideae View MSA
124579133 5269 Grass View MSA
122046762 5273 Angiosperm View MSA
121345364 5274 Embryophyte View MSA
123426564 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.482        
cufflinks 3.571       High
cufflinks 1.036        
cufflinks 0.589       Low
cufflinks 1.109        
cufflinks 4.213       High
cufflinks 1.363        
cufflinks 2.045       High
cufflinks 2.107       High
cufflinks 0.868        
cufflinks 1.293        
cufflinks 0.957        
cufflinks 0.587       Low
cufflinks 0.977        
cufflinks 0.594       Low
cufflinks 0.973        
cufflinks 1.045        
cufflinks 0.705        
cufflinks 0.44       Low
cufflinks 0.772        

0 Strain