Gene : Seita.4G105000 S. italica v2.2
Defline:  (1 of 1) KOG1909//KOG4308 - Ran GTPase-activating protein // LRR-containing protein Genomic Order:  1050
Name:  ? Seita.4G105000 Secondary Identifier:  ? PAC:32707598
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G105000 0.5kb upstream 0.5kb upstream 7000 true scaffold_4: 9518875-9525874 Setaria italica
Seita.4G105000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9525375-9525874 Setaria italica
Seita.4G105000 0.5kb downstream 0.5kb downstream 7000 true scaffold_4: 9518375-9525374 Setaria italica
Seita.4G105000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9518375-9518874 Setaria italica
Seita.4G105000 1.0kb upstream 1.0kb upstream 7500 true scaffold_4: 9518875-9526374 Setaria italica
Seita.4G105000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9525375-9526374 Setaria italica
Seita.4G105000 1.0kb downstream 1.0kb downstream 7500 true scaffold_4: 9517875-9525374 Setaria italica
Seita.4G105000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9517875-9518874 Setaria italica
Seita.4G105000 2.0kb upstream 2.0kb upstream 8500 true scaffold_4: 9518875-9527374 Setaria italica
Seita.4G105000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9525375-9527374 Setaria italica
Seita.4G105000 2.0kb downstream 2.0kb downstream 8500 true scaffold_4: 9516875-9525374 Setaria italica
Seita.4G105000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9516875-9518874 Setaria italica
Seita.4G105000 5.0kb upstream 5.0kb upstream 11500 true scaffold_4: 9518875-9530374 Setaria italica
Seita.4G105000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9525375-9530374 Setaria italica
Seita.4G105000 5.0kb downstream 5.0kb downstream 11500 true scaffold_4: 9513875-9525374 Setaria italica
Seita.4G105000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9513875-9518874 Setaria italica
Seita.4G105000 10.0kb upstream 10.0kb upstream 16500 true scaffold_4: 9518875-9535374 Setaria italica
Seita.4G105000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9525375-9535374 Setaria italica
Seita.4G105000 10.0kb downstream 10.0kb downstream 16500 true scaffold_4: 9508875-9525374 Setaria italica
Seita.4G105000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9508875-9518874 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041184 5273 Angiosperm View MSA
122179398 5267 Panicoideae View MSA
124580146 5269 Grass View MSA
121345266 5274 Embryophyte View MSA
123427876 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.292        
cufflinks 5.325        
cufflinks 4.453        
cufflinks 2.992       Low
cufflinks 4.692        
cufflinks 5.424        
cufflinks 7.2        
cufflinks 10.884       High
cufflinks 13.604     High High
cufflinks 4.272        
cufflinks 4.348        
cufflinks 3.847        
cufflinks 3.048       Low
cufflinks 7.16        
cufflinks 2.733       Low
cufflinks 7.455        
cufflinks 3.951        
cufflinks 6.697        
cufflinks 3.054       Low
cufflinks 2.84       Low

0 Strain