Gene : Seita.4G103600 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1036
Name:  ? Seita.4G103600 Secondary Identifier:  ? PAC:32707199
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G103600 0.5kb upstream 0.5kb upstream 2002 true scaffold_4: 9340088-9342089 Setaria italica
Seita.4G103600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9341590-9342089 Setaria italica
Seita.4G103600 0.5kb downstream 0.5kb downstream 2002 true scaffold_4: 9339588-9341589 Setaria italica
Seita.4G103600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9339588-9340087 Setaria italica
Seita.4G103600 1.0kb upstream 1.0kb upstream 2502 true scaffold_4: 9340088-9342589 Setaria italica
Seita.4G103600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9341590-9342589 Setaria italica
Seita.4G103600 1.0kb downstream 1.0kb downstream 2502 true scaffold_4: 9339088-9341589 Setaria italica
Seita.4G103600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9339088-9340087 Setaria italica
Seita.4G103600 2.0kb upstream 2.0kb upstream 3502 true scaffold_4: 9340088-9343589 Setaria italica
Seita.4G103600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9341590-9343589 Setaria italica
Seita.4G103600 2.0kb downstream 2.0kb downstream 3502 true scaffold_4: 9338088-9341589 Setaria italica
Seita.4G103600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9338088-9340087 Setaria italica
Seita.4G103600 5.0kb upstream 5.0kb upstream 6502 true scaffold_4: 9340088-9346589 Setaria italica
Seita.4G103600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9341590-9346589 Setaria italica
Seita.4G103600 5.0kb downstream 5.0kb downstream 6502 true scaffold_4: 9335088-9341589 Setaria italica
Seita.4G103600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9335088-9340087 Setaria italica
Seita.4G103600 10.0kb upstream 10.0kb upstream 11502 true scaffold_4: 9340088-9351589 Setaria italica
Seita.4G103600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9341590-9351589 Setaria italica
Seita.4G103600 10.0kb downstream 10.0kb downstream 11502 true scaffold_4: 9330088-9341589 Setaria italica
Seita.4G103600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9330088-9340087 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992617 5273 Angiosperm View MSA
122116255 5267 Panicoideae View MSA
124570432 5269 Grass View MSA
121262959 5274 Embryophyte View MSA
123301573 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.101     Low  
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.037     Low  
cufflinks 0.032     Low  
cufflinks 0.219        
cufflinks 0.011     Low Low
cufflinks 0.58       High
cufflinks 0.069     Low  
cufflinks 0.302        
cufflinks 0.199        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.474       High
cufflinks 0.013     Low Low
cufflinks 0.491       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.432        

0 Strain