Gene : Seita.4G103800 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  1038
Name:  ? Seita.4G103800 Secondary Identifier:  ? PAC:32707274
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G103800 0.5kb upstream 0.5kb upstream 2695 true scaffold_4: 9344965-9347659 Setaria italica
Seita.4G103800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9347160-9347659 Setaria italica
Seita.4G103800 0.5kb downstream 0.5kb downstream 2695 true scaffold_4: 9344465-9347159 Setaria italica
Seita.4G103800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9344465-9344964 Setaria italica
Seita.4G103800 1.0kb upstream 1.0kb upstream 3195 true scaffold_4: 9344965-9348159 Setaria italica
Seita.4G103800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9347160-9348159 Setaria italica
Seita.4G103800 1.0kb downstream 1.0kb downstream 3195 true scaffold_4: 9343965-9347159 Setaria italica
Seita.4G103800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9343965-9344964 Setaria italica
Seita.4G103800 2.0kb upstream 2.0kb upstream 4195 true scaffold_4: 9344965-9349159 Setaria italica
Seita.4G103800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9347160-9349159 Setaria italica
Seita.4G103800 2.0kb downstream 2.0kb downstream 4195 true scaffold_4: 9342965-9347159 Setaria italica
Seita.4G103800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9342965-9344964 Setaria italica
Seita.4G103800 5.0kb upstream 5.0kb upstream 7195 true scaffold_4: 9344965-9352159 Setaria italica
Seita.4G103800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9347160-9352159 Setaria italica
Seita.4G103800 5.0kb downstream 5.0kb downstream 7195 true scaffold_4: 9339965-9347159 Setaria italica
Seita.4G103800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9339965-9344964 Setaria italica
Seita.4G103800 10.0kb upstream 10.0kb upstream 12195 true scaffold_4: 9344965-9357159 Setaria italica
Seita.4G103800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9347160-9357159 Setaria italica
Seita.4G103800 10.0kb downstream 10.0kb downstream 12195 true scaffold_4: 9334965-9347159 Setaria italica
Seita.4G103800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9334965-9344964 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176746 5267 Panicoideae View MSA
124586216 5269 Grass View MSA
122044387 5273 Angiosperm View MSA
121310287 5274 Embryophyte View MSA
123347814 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.865        
cufflinks 1.879       High
cufflinks 0.091       Low
cufflinks 0.058     Low Low
cufflinks 0.288        
cufflinks 2.061       High
cufflinks 0.911        
cufflinks 0.586        
cufflinks 0.876        
cufflinks 2.064       High
cufflinks 1.643        
cufflinks 0.441        
cufflinks 0.916        
cufflinks 0.038     Low Low
cufflinks 0.926        
cufflinks 0.52        
cufflinks 0.728        
cufflinks 0.136       Low
cufflinks 0.129       Low
cufflinks 1.079        

0 Strain