Gene : Seita.4G107500 S. italica v2.2
Genomic Order:  1075 Name:  ? Seita.4G107500
Secondary Identifier:  ? PAC:32708241
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G107500 0.5kb upstream 0.5kb upstream 4324 true scaffold_4: 9934516-9938839 Setaria italica
Seita.4G107500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9938340-9938839 Setaria italica
Seita.4G107500 0.5kb downstream 0.5kb downstream 4324 true scaffold_4: 9934016-9938339 Setaria italica
Seita.4G107500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9934016-9934515 Setaria italica
Seita.4G107500 1.0kb upstream 1.0kb upstream 4824 true scaffold_4: 9934516-9939339 Setaria italica
Seita.4G107500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9938340-9939339 Setaria italica
Seita.4G107500 1.0kb downstream 1.0kb downstream 4824 true scaffold_4: 9933516-9938339 Setaria italica
Seita.4G107500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9933516-9934515 Setaria italica
Seita.4G107500 2.0kb upstream 2.0kb upstream 5824 true scaffold_4: 9934516-9940339 Setaria italica
Seita.4G107500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9938340-9940339 Setaria italica
Seita.4G107500 2.0kb downstream 2.0kb downstream 5824 true scaffold_4: 9932516-9938339 Setaria italica
Seita.4G107500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9932516-9934515 Setaria italica
Seita.4G107500 5.0kb upstream 5.0kb upstream 8824 true scaffold_4: 9934516-9943339 Setaria italica
Seita.4G107500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9938340-9943339 Setaria italica
Seita.4G107500 5.0kb downstream 5.0kb downstream 8824 true scaffold_4: 9929516-9938339 Setaria italica
Seita.4G107500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9929516-9934515 Setaria italica
Seita.4G107500 10.0kb upstream 10.0kb upstream 13824 true scaffold_4: 9934516-9948339 Setaria italica
Seita.4G107500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9938340-9948339 Setaria italica
Seita.4G107500 10.0kb downstream 10.0kb downstream 13824 true scaffold_4: 9924516-9938339 Setaria italica
Seita.4G107500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9924516-9934515 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026351 5273 Angiosperm View MSA
122193707 5267 Panicoideae View MSA
124579308 5269 Grass View MSA
121296290 5274 Embryophyte View MSA
123334480 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.362        
cufflinks 0.238        
cufflinks 0.247        
cufflinks 0.249        
cufflinks 0.116        
cufflinks 0.294        
cufflinks 0.13        
cufflinks 0.138        
cufflinks 0.045     Low Low
cufflinks 1.647       High
cufflinks 0.38        
cufflinks 0.201        
cufflinks 0.255        
cufflinks 0.356        
cufflinks 0.303        
cufflinks 0.288        
cufflinks 0.113     Low  
cufflinks 0.363        
cufflinks 0.773       High
cufflinks 0.094     Low Low

0 Strain