Gene : Seita.4G105500 S. italica v2.2
Defline:  (1 of 2) PTHR13343:SF17 - CELLULAR REPRESSOR OF E1A-STIMULATED GENES, ISOFORM A Genomic Order:  1055
Name:  ? Seita.4G105500 Secondary Identifier:  ? PAC:32708087
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G105500 0.5kb upstream 0.5kb upstream 3206 true scaffold_4: 9552267-9555472 Setaria italica
Seita.4G105500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9554973-9555472 Setaria italica
Seita.4G105500 0.5kb downstream 0.5kb downstream 3206 true scaffold_4: 9551767-9554972 Setaria italica
Seita.4G105500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9551767-9552266 Setaria italica
Seita.4G105500 1.0kb upstream 1.0kb upstream 3706 true scaffold_4: 9552267-9555972 Setaria italica
Seita.4G105500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9554973-9555972 Setaria italica
Seita.4G105500 1.0kb downstream 1.0kb downstream 3706 true scaffold_4: 9551267-9554972 Setaria italica
Seita.4G105500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9551267-9552266 Setaria italica
Seita.4G105500 2.0kb upstream 2.0kb upstream 4706 true scaffold_4: 9552267-9556972 Setaria italica
Seita.4G105500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9554973-9556972 Setaria italica
Seita.4G105500 2.0kb downstream 2.0kb downstream 4706 true scaffold_4: 9550267-9554972 Setaria italica
Seita.4G105500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9550267-9552266 Setaria italica
Seita.4G105500 5.0kb upstream 5.0kb upstream 7706 true scaffold_4: 9552267-9559972 Setaria italica
Seita.4G105500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9554973-9559972 Setaria italica
Seita.4G105500 5.0kb downstream 5.0kb downstream 7706 true scaffold_4: 9547267-9554972 Setaria italica
Seita.4G105500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9547267-9552266 Setaria italica
Seita.4G105500 10.0kb upstream 10.0kb upstream 12706 true scaffold_4: 9552267-9564972 Setaria italica
Seita.4G105500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9554973-9564972 Setaria italica
Seita.4G105500 10.0kb downstream 10.0kb downstream 12706 true scaffold_4: 9542267-9554972 Setaria italica
Seita.4G105500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9542267-9552266 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183936 5267 Panicoideae View MSA
124584275 5269 Grass View MSA
122043894 5273 Angiosperm View MSA
121347354 5274 Embryophyte View MSA
123424042 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.687        
cufflinks 5.375       Low
cufflinks 13.47     High  
cufflinks 13.095     High  
cufflinks 9.204        
cufflinks 5.044       Low
cufflinks 6.296       Low
cufflinks 12.0        
cufflinks 8.002        
cufflinks 14.256       High
cufflinks 9.42        
cufflinks 11.209        
cufflinks 17.574     High High
cufflinks 9.94        
cufflinks 13.055        
cufflinks 5.98       Low
cufflinks 14.671     High High
cufflinks 9.448        
cufflinks 10.21        
cufflinks 12.059        

0 Strain