Gene : Seita.4G105700 S. italica v2.2
Defline:  (1 of 1) PTHR16007//PTHR16007:SF9 - EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED Genomic Order:  1057
Name:  ? Seita.4G105700 Secondary Identifier:  ? PAC:32707300
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G105700 0.5kb upstream 0.5kb upstream 1807 true scaffold_4: 9567739-9569545 Setaria italica
Seita.4G105700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9569046-9569545 Setaria italica
Seita.4G105700 0.5kb downstream 0.5kb downstream 1807 true scaffold_4: 9567239-9569045 Setaria italica
Seita.4G105700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9567239-9567738 Setaria italica
Seita.4G105700 1.0kb upstream 1.0kb upstream 2307 true scaffold_4: 9567739-9570045 Setaria italica
Seita.4G105700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9569046-9570045 Setaria italica
Seita.4G105700 1.0kb downstream 1.0kb downstream 2307 true scaffold_4: 9566739-9569045 Setaria italica
Seita.4G105700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9566739-9567738 Setaria italica
Seita.4G105700 2.0kb upstream 2.0kb upstream 3307 true scaffold_4: 9567739-9571045 Setaria italica
Seita.4G105700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9569046-9571045 Setaria italica
Seita.4G105700 2.0kb downstream 2.0kb downstream 3307 true scaffold_4: 9565739-9569045 Setaria italica
Seita.4G105700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9565739-9567738 Setaria italica
Seita.4G105700 5.0kb upstream 5.0kb upstream 6307 true scaffold_4: 9567739-9574045 Setaria italica
Seita.4G105700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9569046-9574045 Setaria italica
Seita.4G105700 5.0kb downstream 5.0kb downstream 6307 true scaffold_4: 9562739-9569045 Setaria italica
Seita.4G105700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9562739-9567738 Setaria italica
Seita.4G105700 10.0kb upstream 10.0kb upstream 11307 true scaffold_4: 9567739-9579045 Setaria italica
Seita.4G105700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9569046-9579045 Setaria italica
Seita.4G105700 10.0kb downstream 10.0kb downstream 11307 true scaffold_4: 9557739-9569045 Setaria italica
Seita.4G105700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9557739-9567738 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177633 5267 Panicoideae View MSA
124574610 5269 Grass View MSA
122046110 5273 Angiosperm View MSA
121350750 5274 Embryophyte View MSA
123381874 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.842        
cufflinks 5.324        
cufflinks 2.397       Low
cufflinks 1.818       Low
cufflinks 1.976       Low
cufflinks 7.194        
cufflinks 4.215        
cufflinks 6.543        
cufflinks 2.834        
cufflinks 12.975       High
cufflinks 5.251        
cufflinks 5.345        
cufflinks 4.448        
cufflinks 4.727        
cufflinks 5.886        
cufflinks 3.49        
cufflinks 7.193        
cufflinks 2.915        
cufflinks 2.871        
cufflinks 6.974        

0 Strain