Gene : Seita.4G108200 S. italica v2.2
Defline:  (1 of 4) PF06522 - NADH-ubiquinone reductase complex 1 MLRQ subunit (B12D) Genomic Order:  1082
Name:  ? Seita.4G108200 Secondary Identifier:  ? PAC:32709345
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G108200 0.5kb upstream 0.5kb upstream 2123 true scaffold_4: 9997805-9999927 Setaria italica
Seita.4G108200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 9999428-9999927 Setaria italica
Seita.4G108200 0.5kb downstream 0.5kb downstream 2123 true scaffold_4: 9997305-9999427 Setaria italica
Seita.4G108200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 9997305-9997804 Setaria italica
Seita.4G108200 1.0kb upstream 1.0kb upstream 2623 true scaffold_4: 9997805-10000427 Setaria italica
Seita.4G108200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 9999428-10000427 Setaria italica
Seita.4G108200 1.0kb downstream 1.0kb downstream 2623 true scaffold_4: 9996805-9999427 Setaria italica
Seita.4G108200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 9996805-9997804 Setaria italica
Seita.4G108200 2.0kb upstream 2.0kb upstream 3623 true scaffold_4: 9997805-10001427 Setaria italica
Seita.4G108200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 9999428-10001427 Setaria italica
Seita.4G108200 2.0kb downstream 2.0kb downstream 3623 true scaffold_4: 9995805-9999427 Setaria italica
Seita.4G108200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 9995805-9997804 Setaria italica
Seita.4G108200 5.0kb upstream 5.0kb upstream 6623 true scaffold_4: 9997805-10004427 Setaria italica
Seita.4G108200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 9999428-10004427 Setaria italica
Seita.4G108200 5.0kb downstream 5.0kb downstream 6623 true scaffold_4: 9992805-9999427 Setaria italica
Seita.4G108200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 9992805-9997804 Setaria italica
Seita.4G108200 10.0kb upstream 10.0kb upstream 11623 true scaffold_4: 9997805-10009427 Setaria italica
Seita.4G108200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 9999428-10009427 Setaria italica
Seita.4G108200 10.0kb downstream 10.0kb downstream 11623 true scaffold_4: 9987805-9999427 Setaria italica
Seita.4G108200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 9987805-9997804 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176276 5267 Panicoideae View MSA
124586194 5269 Grass View MSA
122049725 5273 Angiosperm View MSA
121344537 5274 Embryophyte View MSA
123428390 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 347.83     High  
cufflinks 233.654     High  
cufflinks 99.156     High Low
cufflinks 103.466     High Low
cufflinks 86.816     High Low
cufflinks 221.054     High  
cufflinks 216.541     High  
cufflinks 163.035     High  
cufflinks 95.092     High Low
cufflinks 209.972     High  
cufflinks 206.625     High  
cufflinks 476.128     High High
cufflinks 477.743     High High
cufflinks 160.798     High  
cufflinks 245.827     High  
cufflinks 367.923     High  
cufflinks 454.968     High High
cufflinks 349.851     High  
cufflinks 98.009     High Low
cufflinks 413.88     High High

0 Strain