Gene : Seita.4G112400 S. italica v2.2
Defline:  (1 of 1) PTHR10799//PTHR10799:SF783 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Genomic Order:  1124
Name:  ? Seita.4G112400 Secondary Identifier:  ? PAC:32708528
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G112400 0.5kb upstream 0.5kb upstream 22625 true scaffold_4: 10562405-10585029 Setaria italica
Seita.4G112400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 10562405-10562904 Setaria italica
Seita.4G112400 0.5kb downstream 0.5kb downstream 22625 true scaffold_4: 10562905-10585529 Setaria italica
Seita.4G112400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 10585030-10585529 Setaria italica
Seita.4G112400 1.0kb upstream 1.0kb upstream 23125 true scaffold_4: 10561905-10585029 Setaria italica
Seita.4G112400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 10561905-10562904 Setaria italica
Seita.4G112400 1.0kb downstream 1.0kb downstream 23125 true scaffold_4: 10562905-10586029 Setaria italica
Seita.4G112400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 10585030-10586029 Setaria italica
Seita.4G112400 2.0kb upstream 2.0kb upstream 24125 true scaffold_4: 10560905-10585029 Setaria italica
Seita.4G112400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 10560905-10562904 Setaria italica
Seita.4G112400 2.0kb downstream 2.0kb downstream 24125 true scaffold_4: 10562905-10587029 Setaria italica
Seita.4G112400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 10585030-10587029 Setaria italica
Seita.4G112400 5.0kb upstream 5.0kb upstream 27125 true scaffold_4: 10557905-10585029 Setaria italica
Seita.4G112400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 10557905-10562904 Setaria italica
Seita.4G112400 5.0kb downstream 5.0kb downstream 27125 true scaffold_4: 10562905-10590029 Setaria italica
Seita.4G112400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 10585030-10590029 Setaria italica
Seita.4G112400 10.0kb upstream 10.0kb upstream 32125 true scaffold_4: 10552905-10585029 Setaria italica
Seita.4G112400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 10552905-10562904 Setaria italica
Seita.4G112400 10.0kb downstream 10.0kb downstream 32125 true scaffold_4: 10562905-10595029 Setaria italica
Seita.4G112400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 10585030-10595029 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179258 5267 Panicoideae View MSA
124582002 5269 Grass View MSA
122049865 5273 Angiosperm View MSA
121348487 5274 Embryophyte View MSA
123427983 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.259     High High
cufflinks 16.398     High  
cufflinks 21.622     High  
cufflinks 18.206     High  
cufflinks 12.701     High  
cufflinks 16.77     High  
cufflinks 16.474     High  
cufflinks 9.561        
cufflinks 10.781        
cufflinks 6.882       Low
cufflinks 17.932     High  
cufflinks 10.22        
cufflinks 13.499     High  
cufflinks 17.618     High  
cufflinks 13.723        
cufflinks 21.332     High  
cufflinks 6.609       Low
cufflinks 34.475     High High
cufflinks 12.332     High  
cufflinks 9.149       Low

0 Strain