Gene : Seita.4G114600 S. italica v2.2
Defline:  (1 of 2) PTHR23409 - RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN Genomic Order:  1146
Name:  ? Seita.4G114600 Secondary Identifier:  ? PAC:32708690
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  
Sitalica PWY-7226 Setaria italica pathologic  
Sitalica PWY-7227 Setaria italica pathologic  
Sitalica PWY-7228 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G114600 0.5kb upstream 0.5kb upstream 1520 true scaffold_4: 10865903-10867422 Setaria italica
Seita.4G114600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 10866923-10867422 Setaria italica
Seita.4G114600 0.5kb downstream 0.5kb downstream 1520 true scaffold_4: 10865403-10866922 Setaria italica
Seita.4G114600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 10865403-10865902 Setaria italica
Seita.4G114600 1.0kb upstream 1.0kb upstream 2020 true scaffold_4: 10865903-10867922 Setaria italica
Seita.4G114600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 10866923-10867922 Setaria italica
Seita.4G114600 1.0kb downstream 1.0kb downstream 2020 true scaffold_4: 10864903-10866922 Setaria italica
Seita.4G114600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 10864903-10865902 Setaria italica
Seita.4G114600 2.0kb upstream 2.0kb upstream 3020 true scaffold_4: 10865903-10868922 Setaria italica
Seita.4G114600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 10866923-10868922 Setaria italica
Seita.4G114600 2.0kb downstream 2.0kb downstream 3020 true scaffold_4: 10863903-10866922 Setaria italica
Seita.4G114600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 10863903-10865902 Setaria italica
Seita.4G114600 5.0kb upstream 5.0kb upstream 6020 true scaffold_4: 10865903-10871922 Setaria italica
Seita.4G114600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 10866923-10871922 Setaria italica
Seita.4G114600 5.0kb downstream 5.0kb downstream 6020 true scaffold_4: 10860903-10866922 Setaria italica
Seita.4G114600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 10860903-10865902 Setaria italica
Seita.4G114600 10.0kb upstream 10.0kb upstream 11020 true scaffold_4: 10865903-10876922 Setaria italica
Seita.4G114600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 10866923-10876922 Setaria italica
Seita.4G114600 10.0kb downstream 10.0kb downstream 11020 true scaffold_4: 10855903-10866922 Setaria italica
Seita.4G114600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 10855903-10865902 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191412 5267 Panicoideae View MSA
124585111 5269 Grass View MSA
122041688 5273 Angiosperm View MSA
121344906 5274 Embryophyte View MSA
123428543 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.605     High  
cufflinks 18.536     High  
cufflinks 2.167       Low
cufflinks 1.27       Low
cufflinks 4.273       Low
cufflinks 16.271     High  
cufflinks 18.757     High  
cufflinks 8.13        
cufflinks 11.468        
cufflinks 30.739     High High
cufflinks 17.307     High  
cufflinks 12.608        
cufflinks 10.294        
cufflinks 7.122        
cufflinks 14.339     High  
cufflinks 18.062     High  
cufflinks 10.97        
cufflinks 20.543     High  
cufflinks 3.196       Low
cufflinks 22.464     High  

0 Strain