Gene : Seita.4G122000 S. italica v2.2
Defline:  (1 of 2) PTHR23105//PTHR23105:SF61 - RIBOSOMAL PROTEIN L7AE FAMILY MEMBER Genomic Order:  1220
Name:  ? Seita.4G122000 Secondary Identifier:  ? PAC:32709030
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G122000 0.5kb upstream 0.5kb upstream 4868 true scaffold_4: 12505742-12510609 Setaria italica
Seita.4G122000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12505742-12506241 Setaria italica
Seita.4G122000 0.5kb downstream 0.5kb downstream 4868 true scaffold_4: 12506242-12511109 Setaria italica
Seita.4G122000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12510610-12511109 Setaria italica
Seita.4G122000 1.0kb upstream 1.0kb upstream 5368 true scaffold_4: 12505242-12510609 Setaria italica
Seita.4G122000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12505242-12506241 Setaria italica
Seita.4G122000 1.0kb downstream 1.0kb downstream 5368 true scaffold_4: 12506242-12511609 Setaria italica
Seita.4G122000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12510610-12511609 Setaria italica
Seita.4G122000 2.0kb upstream 2.0kb upstream 6368 true scaffold_4: 12504242-12510609 Setaria italica
Seita.4G122000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12504242-12506241 Setaria italica
Seita.4G122000 2.0kb downstream 2.0kb downstream 6368 true scaffold_4: 12506242-12512609 Setaria italica
Seita.4G122000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12510610-12512609 Setaria italica
Seita.4G122000 5.0kb upstream 5.0kb upstream 9368 true scaffold_4: 12501242-12510609 Setaria italica
Seita.4G122000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12501242-12506241 Setaria italica
Seita.4G122000 5.0kb downstream 5.0kb downstream 9368 true scaffold_4: 12506242-12515609 Setaria italica
Seita.4G122000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12510610-12515609 Setaria italica
Seita.4G122000 10.0kb upstream 10.0kb upstream 14368 true scaffold_4: 12496242-12510609 Setaria italica
Seita.4G122000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12496242-12506241 Setaria italica
Seita.4G122000 10.0kb downstream 10.0kb downstream 14368 true scaffold_4: 12506242-12520609 Setaria italica
Seita.4G122000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12510610-12520609 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040888 5273 Angiosperm View MSA
122180582 5267 Panicoideae View MSA
124585008 5269 Grass View MSA
121345742 5274 Embryophyte View MSA
123425979 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.674        
cufflinks 4.193        
cufflinks 0.613       Low
cufflinks 0.135       Low
cufflinks 0.464       Low
cufflinks 4.931        
cufflinks 2.084        
cufflinks 6.169        
cufflinks 5.725        
cufflinks 7.82       High
cufflinks 4.191        
cufflinks 4.457        
cufflinks 4.892        
cufflinks 1.807        
cufflinks 4.388        
cufflinks 1.564        
cufflinks 7.95       High
cufflinks 1.483        
cufflinks 0.367       Low
cufflinks 7.363        

0 Strain