Gene : Seita.4G126100 S. italica v2.2
Defline:  (1 of 1) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  1261
Name:  ? Seita.4G126100 Secondary Identifier:  ? PAC:32707171
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G126100 0.5kb upstream 0.5kb upstream 2812 true scaffold_4: 13036587-13039398 Setaria italica
Seita.4G126100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13036587-13037086 Setaria italica
Seita.4G126100 0.5kb downstream 0.5kb downstream 2812 true scaffold_4: 13037087-13039898 Setaria italica
Seita.4G126100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13039399-13039898 Setaria italica
Seita.4G126100 1.0kb upstream 1.0kb upstream 3312 true scaffold_4: 13036087-13039398 Setaria italica
Seita.4G126100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13036087-13037086 Setaria italica
Seita.4G126100 1.0kb downstream 1.0kb downstream 3312 true scaffold_4: 13037087-13040398 Setaria italica
Seita.4G126100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13039399-13040398 Setaria italica
Seita.4G126100 2.0kb upstream 2.0kb upstream 4312 true scaffold_4: 13035087-13039398 Setaria italica
Seita.4G126100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13035087-13037086 Setaria italica
Seita.4G126100 2.0kb downstream 2.0kb downstream 4312 true scaffold_4: 13037087-13041398 Setaria italica
Seita.4G126100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13039399-13041398 Setaria italica
Seita.4G126100 5.0kb upstream 5.0kb upstream 7312 true scaffold_4: 13032087-13039398 Setaria italica
Seita.4G126100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13032087-13037086 Setaria italica
Seita.4G126100 5.0kb downstream 5.0kb downstream 7312 true scaffold_4: 13037087-13044398 Setaria italica
Seita.4G126100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13039399-13044398 Setaria italica
Seita.4G126100 10.0kb upstream 10.0kb upstream 12312 true scaffold_4: 13027087-13039398 Setaria italica
Seita.4G126100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13027087-13037086 Setaria italica
Seita.4G126100 10.0kb downstream 10.0kb downstream 12312 true scaffold_4: 13037087-13049398 Setaria italica
Seita.4G126100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13039399-13049398 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184722 5267 Panicoideae View MSA
124579907 5269 Grass View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.548        
cufflinks 1.884        
cufflinks 0.876        
cufflinks 1.635        
cufflinks 2.337        
cufflinks 1.813        
cufflinks 1.607        
cufflinks 2.78       High
cufflinks 3.622       High
cufflinks 2.868       High
cufflinks 1.874        
cufflinks 0.462       Low
cufflinks 0.764        
cufflinks 0.92        
cufflinks 0.485       Low
cufflinks 3.167       High
cufflinks 0.486       Low
cufflinks 1.222        
cufflinks 0.695        
cufflinks 0.463       Low

0 Strain