Gene : Seita.4G129500 S. italica v2.2
Defline:  (1 of 1) PTHR10774//PTHR10774:SF90 - EXTENDED SYNAPTOTAGMIN-RELATED Genomic Order:  1295
Name:  ? Seita.4G129500 Secondary Identifier:  ? PAC:32707201
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G129500 0.5kb upstream 0.5kb upstream 6882 true scaffold_4: 13589622-13596503 Setaria italica
Seita.4G129500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13589622-13590121 Setaria italica
Seita.4G129500 0.5kb downstream 0.5kb downstream 6882 true scaffold_4: 13590122-13597003 Setaria italica
Seita.4G129500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13596504-13597003 Setaria italica
Seita.4G129500 1.0kb upstream 1.0kb upstream 7382 true scaffold_4: 13589122-13596503 Setaria italica
Seita.4G129500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13589122-13590121 Setaria italica
Seita.4G129500 1.0kb downstream 1.0kb downstream 7382 true scaffold_4: 13590122-13597503 Setaria italica
Seita.4G129500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13596504-13597503 Setaria italica
Seita.4G129500 2.0kb upstream 2.0kb upstream 8382 true scaffold_4: 13588122-13596503 Setaria italica
Seita.4G129500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13588122-13590121 Setaria italica
Seita.4G129500 2.0kb downstream 2.0kb downstream 8382 true scaffold_4: 13590122-13598503 Setaria italica
Seita.4G129500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13596504-13598503 Setaria italica
Seita.4G129500 5.0kb upstream 5.0kb upstream 11382 true scaffold_4: 13585122-13596503 Setaria italica
Seita.4G129500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13585122-13590121 Setaria italica
Seita.4G129500 5.0kb downstream 5.0kb downstream 11382 true scaffold_4: 13590122-13601503 Setaria italica
Seita.4G129500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13596504-13601503 Setaria italica
Seita.4G129500 10.0kb upstream 10.0kb upstream 16382 true scaffold_4: 13580122-13596503 Setaria italica
Seita.4G129500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13580122-13590121 Setaria italica
Seita.4G129500 10.0kb downstream 10.0kb downstream 16382 true scaffold_4: 13590122-13606503 Setaria italica
Seita.4G129500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13596504-13606503 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182350 5267 Panicoideae View MSA
124573452 5269 Grass View MSA
122044186 5273 Angiosperm View MSA
121350183 5274 Embryophyte View MSA
123381609 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.497        
cufflinks 4.804        
cufflinks 6.39        
cufflinks 5.379        
cufflinks 4.981        
cufflinks 5.547        
cufflinks 5.473        
cufflinks 3.978        
cufflinks 3.79       Low
cufflinks 3.607       Low
cufflinks 4.027        
cufflinks 7.086        
cufflinks 6.257        
cufflinks 9.745       High
cufflinks 9.958       High
cufflinks 4.33        
cufflinks 7.703       High
cufflinks 3.306       Low
cufflinks 5.51        
cufflinks 7.034        

0 Strain