Gene : Seita.4G130400 S. italica v2.2
Defline:  (1 of 19) 1.1.1.330 - Very-long-chain 3-oxoacyl-CoA reductase / Very-long-chain beta-ketoacyl-CoA reductase Genomic Order:  1304
Name:  ? Seita.4G130400 Secondary Identifier:  ? PAC:32706641
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5080 Setaria italica pathologic  
Sitalica PWY-6433 Setaria italica pathologic  
Sitalica PWY-6598 Setaria italica pathologic  
Sitalica PWY-7036 Setaria italica pathologic  
Sitalica PWY-7601 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  
Sitalica PWY-7619 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G130400 0.5kb upstream 0.5kb upstream 5343 true scaffold_4: 13680698-13686040 Setaria italica
Seita.4G130400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13685541-13686040 Setaria italica
Seita.4G130400 0.5kb downstream 0.5kb downstream 5343 true scaffold_4: 13680198-13685540 Setaria italica
Seita.4G130400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13680198-13680697 Setaria italica
Seita.4G130400 1.0kb upstream 1.0kb upstream 5843 true scaffold_4: 13680698-13686540 Setaria italica
Seita.4G130400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13685541-13686540 Setaria italica
Seita.4G130400 1.0kb downstream 1.0kb downstream 5843 true scaffold_4: 13679698-13685540 Setaria italica
Seita.4G130400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13679698-13680697 Setaria italica
Seita.4G130400 2.0kb upstream 2.0kb upstream 6843 true scaffold_4: 13680698-13687540 Setaria italica
Seita.4G130400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13685541-13687540 Setaria italica
Seita.4G130400 2.0kb downstream 2.0kb downstream 6843 true scaffold_4: 13678698-13685540 Setaria italica
Seita.4G130400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13678698-13680697 Setaria italica
Seita.4G130400 5.0kb upstream 5.0kb upstream 9843 true scaffold_4: 13680698-13690540 Setaria italica
Seita.4G130400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13685541-13690540 Setaria italica
Seita.4G130400 5.0kb downstream 5.0kb downstream 9843 true scaffold_4: 13675698-13685540 Setaria italica
Seita.4G130400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13675698-13680697 Setaria italica
Seita.4G130400 10.0kb upstream 10.0kb upstream 14843 true scaffold_4: 13680698-13695540 Setaria italica
Seita.4G130400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13685541-13695540 Setaria italica
Seita.4G130400 10.0kb downstream 10.0kb downstream 14843 true scaffold_4: 13670698-13685540 Setaria italica
Seita.4G130400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13670698-13680697 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995624 5273 Angiosperm View MSA
122198743 5267 Panicoideae View MSA
124589060 5269 Grass View MSA
123428985 5275 Viridiplantae View MSA
121265811 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.39       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.46       High
cufflinks 0.067     Low  
cufflinks 0.035     Low  
cufflinks 0.015     Low  
cufflinks 0.046     Low  
cufflinks 0.007     Low  
cufflinks 0.004     Low  
cufflinks 0.002     Low Low
cufflinks 0.003     Low  
cufflinks 0.004     Low  
cufflinks 0.032     Low  
cufflinks 0.003     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  

0 Strain