Gene : Seita.4G137800 S. italica v2.2
Defline:  (1 of 4) PF07172 - Glycine rich protein family (GRP) Genomic Order:  1378
Name:  ? Seita.4G137800 Secondary Identifier:  ? PAC:32706770
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G137800 0.5kb upstream 0.5kb upstream 1638 true scaffold_4: 15412585-15414222 Setaria italica
Seita.4G137800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15412585-15413084 Setaria italica
Seita.4G137800 0.5kb downstream 0.5kb downstream 1638 true scaffold_4: 15413085-15414722 Setaria italica
Seita.4G137800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15414223-15414722 Setaria italica
Seita.4G137800 1.0kb upstream 1.0kb upstream 2138 true scaffold_4: 15412085-15414222 Setaria italica
Seita.4G137800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15412085-15413084 Setaria italica
Seita.4G137800 1.0kb downstream 1.0kb downstream 2138 true scaffold_4: 15413085-15415222 Setaria italica
Seita.4G137800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15414223-15415222 Setaria italica
Seita.4G137800 2.0kb upstream 2.0kb upstream 3138 true scaffold_4: 15411085-15414222 Setaria italica
Seita.4G137800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15411085-15413084 Setaria italica
Seita.4G137800 2.0kb downstream 2.0kb downstream 3138 true scaffold_4: 15413085-15416222 Setaria italica
Seita.4G137800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15414223-15416222 Setaria italica
Seita.4G137800 5.0kb upstream 5.0kb upstream 6138 true scaffold_4: 15408085-15414222 Setaria italica
Seita.4G137800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15408085-15413084 Setaria italica
Seita.4G137800 5.0kb downstream 5.0kb downstream 6138 true scaffold_4: 15413085-15419222 Setaria italica
Seita.4G137800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15414223-15419222 Setaria italica
Seita.4G137800 10.0kb upstream 10.0kb upstream 11138 true scaffold_4: 15403085-15414222 Setaria italica
Seita.4G137800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15403085-15413084 Setaria italica
Seita.4G137800 10.0kb downstream 10.0kb downstream 11138 true scaffold_4: 15413085-15424222 Setaria italica
Seita.4G137800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15414223-15424222 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199431 5267 Panicoideae View MSA
124590814 5269 Grass View MSA
122051270 5273 Angiosperm View MSA
121312387 5274 Embryophyte View MSA
123349563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.741     High  
cufflinks 0.515        
cufflinks 374.064     High  
cufflinks 365.566     High  
cufflinks 163.354     High  
cufflinks 0.588        
cufflinks 300.77     High  
cufflinks 384.936     High  
cufflinks 227.999     High  
cufflinks 83.098     High  
cufflinks 187.792     High  
cufflinks 0.014     Low Low
cufflinks 0.293       Low
cufflinks 387.866     High  
cufflinks 0.014     Low Low
cufflinks 108.232     High  
cufflinks 0.119     Low Low
cufflinks 11.619     High  
cufflinks 426.339     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain