Gene : Seita.4G137700 S. italica v2.2
Defline:  (1 of 4) PF07172 - Glycine rich protein family (GRP) Genomic Order:  1377
Name:  ? Seita.4G137700 Secondary Identifier:  ? PAC:32709466
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G137700 0.5kb upstream 0.5kb upstream 1462 true scaffold_4: 15382444-15383905 Setaria italica
Seita.4G137700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15382444-15382943 Setaria italica
Seita.4G137700 0.5kb downstream 0.5kb downstream 1462 true scaffold_4: 15382944-15384405 Setaria italica
Seita.4G137700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15383906-15384405 Setaria italica
Seita.4G137700 1.0kb upstream 1.0kb upstream 1962 true scaffold_4: 15381944-15383905 Setaria italica
Seita.4G137700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15381944-15382943 Setaria italica
Seita.4G137700 1.0kb downstream 1.0kb downstream 1962 true scaffold_4: 15382944-15384905 Setaria italica
Seita.4G137700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15383906-15384905 Setaria italica
Seita.4G137700 2.0kb upstream 2.0kb upstream 2962 true scaffold_4: 15380944-15383905 Setaria italica
Seita.4G137700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15380944-15382943 Setaria italica
Seita.4G137700 2.0kb downstream 2.0kb downstream 2962 true scaffold_4: 15382944-15385905 Setaria italica
Seita.4G137700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15383906-15385905 Setaria italica
Seita.4G137700 5.0kb upstream 5.0kb upstream 5962 true scaffold_4: 15377944-15383905 Setaria italica
Seita.4G137700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15377944-15382943 Setaria italica
Seita.4G137700 5.0kb downstream 5.0kb downstream 5962 true scaffold_4: 15382944-15388905 Setaria italica
Seita.4G137700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15383906-15388905 Setaria italica
Seita.4G137700 10.0kb upstream 10.0kb upstream 10962 true scaffold_4: 15372944-15383905 Setaria italica
Seita.4G137700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15372944-15382943 Setaria italica
Seita.4G137700 10.0kb downstream 10.0kb downstream 10962 true scaffold_4: 15382944-15393905 Setaria italica
Seita.4G137700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15383906-15393905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181529 5267 Panicoideae View MSA
124590814 5269 Grass View MSA
122051270 5273 Angiosperm View MSA
121312387 5274 Embryophyte View MSA
123349563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.012     Low Low
cufflinks 20.384     High High
cufflinks 0.071     Low  
cufflinks 0.025     Low  
cufflinks 0.039     Low  
cufflinks 16.583     High High
cufflinks 0.205        
cufflinks 0.247        
cufflinks 0.16        
cufflinks 0.113     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.239        
cufflinks 0.018     Low  
cufflinks 0.947        
cufflinks 0.021     Low  
cufflinks 0.432        
cufflinks 0.069     Low  
cufflinks 0.019     Low  

0 Strain