Gene : Seita.4G137900 S. italica v2.2
Genomic Order:  1379 Name:  ? Seita.4G137900
Secondary Identifier:  ? PAC:32707022
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G137900 0.5kb upstream 0.5kb upstream 1634 true scaffold_4: 15445972-15447605 Setaria italica
Seita.4G137900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15445972-15446471 Setaria italica
Seita.4G137900 0.5kb downstream 0.5kb downstream 1634 true scaffold_4: 15446472-15448105 Setaria italica
Seita.4G137900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15447606-15448105 Setaria italica
Seita.4G137900 1.0kb upstream 1.0kb upstream 2134 true scaffold_4: 15445472-15447605 Setaria italica
Seita.4G137900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15445472-15446471 Setaria italica
Seita.4G137900 1.0kb downstream 1.0kb downstream 2134 true scaffold_4: 15446472-15448605 Setaria italica
Seita.4G137900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15447606-15448605 Setaria italica
Seita.4G137900 2.0kb upstream 2.0kb upstream 3134 true scaffold_4: 15444472-15447605 Setaria italica
Seita.4G137900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15444472-15446471 Setaria italica
Seita.4G137900 2.0kb downstream 2.0kb downstream 3134 true scaffold_4: 15446472-15449605 Setaria italica
Seita.4G137900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15447606-15449605 Setaria italica
Seita.4G137900 5.0kb upstream 5.0kb upstream 6134 true scaffold_4: 15441472-15447605 Setaria italica
Seita.4G137900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15441472-15446471 Setaria italica
Seita.4G137900 5.0kb downstream 5.0kb downstream 6134 true scaffold_4: 15446472-15452605 Setaria italica
Seita.4G137900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15447606-15452605 Setaria italica
Seita.4G137900 10.0kb upstream 10.0kb upstream 11134 true scaffold_4: 15436472-15447605 Setaria italica
Seita.4G137900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15436472-15446471 Setaria italica
Seita.4G137900 10.0kb downstream 10.0kb downstream 11134 true scaffold_4: 15446472-15457605 Setaria italica
Seita.4G137900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15447606-15457605 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122053624 5267 Panicoideae Singleton cluster - no MSA
124590814 5269 Grass View MSA
122051270 5273 Angiosperm View MSA
121312387 5274 Embryophyte View MSA
123349563 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.388        
cufflinks 20.298     High  
cufflinks 286.752     High  
cufflinks 308.703     High  
cufflinks 168.305     High  
cufflinks 22.412     High  
cufflinks 152.044     High  
cufflinks 159.269     High  
cufflinks 61.648     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.446        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low Low
cufflinks 97.587     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 120.299     High  
cufflinks 0.014     Low Low
cufflinks 18.279     High  
cufflinks 215.484     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain