Gene : Seita.4G139600 S. italica v2.2
Defline:  (1 of 1) PTHR14894 - CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 Genomic Order:  1396
Name:  ? Seita.4G139600 Secondary Identifier:  ? PAC:32707362
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G139600 0.5kb upstream 0.5kb upstream 4123 true scaffold_4: 15864267-15868389 Setaria italica
Seita.4G139600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15864267-15864766 Setaria italica
Seita.4G139600 0.5kb downstream 0.5kb downstream 4123 true scaffold_4: 15864767-15868889 Setaria italica
Seita.4G139600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15868390-15868889 Setaria italica
Seita.4G139600 1.0kb upstream 1.0kb upstream 4623 true scaffold_4: 15863767-15868389 Setaria italica
Seita.4G139600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15863767-15864766 Setaria italica
Seita.4G139600 1.0kb downstream 1.0kb downstream 4623 true scaffold_4: 15864767-15869389 Setaria italica
Seita.4G139600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15868390-15869389 Setaria italica
Seita.4G139600 2.0kb upstream 2.0kb upstream 5623 true scaffold_4: 15862767-15868389 Setaria italica
Seita.4G139600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15862767-15864766 Setaria italica
Seita.4G139600 2.0kb downstream 2.0kb downstream 5623 true scaffold_4: 15864767-15870389 Setaria italica
Seita.4G139600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15868390-15870389 Setaria italica
Seita.4G139600 5.0kb upstream 5.0kb upstream 8623 true scaffold_4: 15859767-15868389 Setaria italica
Seita.4G139600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15859767-15864766 Setaria italica
Seita.4G139600 5.0kb downstream 5.0kb downstream 8623 true scaffold_4: 15864767-15873389 Setaria italica
Seita.4G139600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15868390-15873389 Setaria italica
Seita.4G139600 10.0kb upstream 10.0kb upstream 13623 true scaffold_4: 15854767-15868389 Setaria italica
Seita.4G139600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15854767-15864766 Setaria italica
Seita.4G139600 10.0kb downstream 10.0kb downstream 13623 true scaffold_4: 15864767-15878389 Setaria italica
Seita.4G139600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15868390-15878389 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189320 5267 Panicoideae View MSA
124575645 5269 Grass View MSA
122046505 5273 Angiosperm View MSA
121347618 5274 Embryophyte View MSA
123424733 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.335     High  
cufflinks 15.535     High  
cufflinks 11.629     High  
cufflinks 10.502       Low
cufflinks 10.561       Low
cufflinks 15.439     High  
cufflinks 11.614        
cufflinks 12.365        
cufflinks 11.78        
cufflinks 8.198       Low
cufflinks 13.097        
cufflinks 14.104     High  
cufflinks 15.362     High  
cufflinks 12.67        
cufflinks 17.159     High High
cufflinks 10.238       Low
cufflinks 16.325     High High
cufflinks 13.684     High  
cufflinks 11.35     High  
cufflinks 15.701     High High

0 Strain