Gene : Seita.4G139500 S. italica v2.2
Defline:  (1 of 1) PTHR12452 - 42-9-9 PROTEIN-RELATED Genomic Order:  1395
Name:  ? Seita.4G139500 Secondary Identifier:  ? PAC:32707744
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G139500 0.5kb upstream 0.5kb upstream 1372 true scaffold_4: 15863697-15865068 Setaria italica
Seita.4G139500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15864569-15865068 Setaria italica
Seita.4G139500 0.5kb downstream 0.5kb downstream 1372 true scaffold_4: 15863197-15864568 Setaria italica
Seita.4G139500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15863197-15863696 Setaria italica
Seita.4G139500 1.0kb upstream 1.0kb upstream 1872 true scaffold_4: 15863697-15865568 Setaria italica
Seita.4G139500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15864569-15865568 Setaria italica
Seita.4G139500 1.0kb downstream 1.0kb downstream 1872 true scaffold_4: 15862697-15864568 Setaria italica
Seita.4G139500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15862697-15863696 Setaria italica
Seita.4G139500 2.0kb upstream 2.0kb upstream 2872 true scaffold_4: 15863697-15866568 Setaria italica
Seita.4G139500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15864569-15866568 Setaria italica
Seita.4G139500 2.0kb downstream 2.0kb downstream 2872 true scaffold_4: 15861697-15864568 Setaria italica
Seita.4G139500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15861697-15863696 Setaria italica
Seita.4G139500 5.0kb upstream 5.0kb upstream 5872 true scaffold_4: 15863697-15869568 Setaria italica
Seita.4G139500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15864569-15869568 Setaria italica
Seita.4G139500 5.0kb downstream 5.0kb downstream 5872 true scaffold_4: 15858697-15864568 Setaria italica
Seita.4G139500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15858697-15863696 Setaria italica
Seita.4G139500 10.0kb upstream 10.0kb upstream 10872 true scaffold_4: 15863697-15874568 Setaria italica
Seita.4G139500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15864569-15874568 Setaria italica
Seita.4G139500 10.0kb downstream 10.0kb downstream 10872 true scaffold_4: 15853697-15864568 Setaria italica
Seita.4G139500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15853697-15863696 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197000 5267 Panicoideae View MSA
124582856 5269 Grass View MSA
122046977 5273 Angiosperm View MSA
121346988 5274 Embryophyte View MSA
123427976 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.821        
cufflinks 14.051     High  
cufflinks 5.579       Low
cufflinks 10.798        
cufflinks 10.588        
cufflinks 14.251     High  
cufflinks 8.912        
cufflinks 23.183     High High
cufflinks 14.117     High  
cufflinks 43.92     High High
cufflinks 8.441        
cufflinks 6.909        
cufflinks 7.199        
cufflinks 29.63     High High
cufflinks 5.603       Low
cufflinks 7.05        
cufflinks 8.488        
cufflinks 5.518       Low
cufflinks 20.589     High High
cufflinks 10.608        

0 Strain