Gene : Seita.4G225600 S. italica v2.2
Defline:  (1 of 16) PF03101//PF04434//PF10551 - FAR1 DNA-binding domain (FAR1) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  2256
Name:  ? Seita.4G225600 Secondary Identifier:  ? PAC:32706330
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G225600 0.5kb upstream 0.5kb upstream 4072 true scaffold_4: 34616495-34620566 Setaria italica
Seita.4G225600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 34620067-34620566 Setaria italica
Seita.4G225600 0.5kb downstream 0.5kb downstream 4072 true scaffold_4: 34615995-34620066 Setaria italica
Seita.4G225600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 34615995-34616494 Setaria italica
Seita.4G225600 1.0kb upstream 1.0kb upstream 4572 true scaffold_4: 34616495-34621066 Setaria italica
Seita.4G225600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 34620067-34621066 Setaria italica
Seita.4G225600 1.0kb downstream 1.0kb downstream 4572 true scaffold_4: 34615495-34620066 Setaria italica
Seita.4G225600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 34615495-34616494 Setaria italica
Seita.4G225600 2.0kb upstream 2.0kb upstream 5572 true scaffold_4: 34616495-34622066 Setaria italica
Seita.4G225600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 34620067-34622066 Setaria italica
Seita.4G225600 2.0kb downstream 2.0kb downstream 5572 true scaffold_4: 34614495-34620066 Setaria italica
Seita.4G225600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 34614495-34616494 Setaria italica
Seita.4G225600 5.0kb upstream 5.0kb upstream 8572 true scaffold_4: 34616495-34625066 Setaria italica
Seita.4G225600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 34620067-34625066 Setaria italica
Seita.4G225600 5.0kb downstream 5.0kb downstream 8572 true scaffold_4: 34611495-34620066 Setaria italica
Seita.4G225600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 34611495-34616494 Setaria italica
Seita.4G225600 10.0kb upstream 10.0kb upstream 13572 true scaffold_4: 34616495-34630066 Setaria italica
Seita.4G225600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 34620067-34630066 Setaria italica
Seita.4G225600 10.0kb downstream 10.0kb downstream 13572 true scaffold_4: 34606495-34620066 Setaria italica
Seita.4G225600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 34606495-34616494 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188167 5267 Panicoideae View MSA
124570271 5269 Grass View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.912       High
cufflinks 2.817       High
cufflinks 1.587        
cufflinks 1.334       Low
cufflinks 1.58        
cufflinks 2.662        
cufflinks 2.763       High
cufflinks 1.651        
cufflinks 1.938        
cufflinks 1.32       Low
cufflinks 2.1        
cufflinks 1.463        
cufflinks 1.866        
cufflinks 1.087       Low
cufflinks 2.211        
cufflinks 3.311       High
cufflinks 1.603        
cufflinks 3.283       High
cufflinks 1.428        
cufflinks 1.825        

0 Strain