Gene : Seita.4G226800 S. italica v2.2
Defline:  (1 of 1) PTHR11941:SF47 - 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 3, MITOCHONDRIAL-RELATED Genomic Order:  2268
Name:  ? Seita.4G226800 Secondary Identifier:  ? PAC:32707676
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7574 Setaria italica pathologic  
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G226800 0.5kb upstream 0.5kb upstream 8054 true scaffold_4: 34776109-34784162 Setaria italica
Seita.4G226800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 34783663-34784162 Setaria italica
Seita.4G226800 0.5kb downstream 0.5kb downstream 8054 true scaffold_4: 34775609-34783662 Setaria italica
Seita.4G226800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 34775609-34776108 Setaria italica
Seita.4G226800 1.0kb upstream 1.0kb upstream 8554 true scaffold_4: 34776109-34784662 Setaria italica
Seita.4G226800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 34783663-34784662 Setaria italica
Seita.4G226800 1.0kb downstream 1.0kb downstream 8554 true scaffold_4: 34775109-34783662 Setaria italica
Seita.4G226800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 34775109-34776108 Setaria italica
Seita.4G226800 2.0kb upstream 2.0kb upstream 9554 true scaffold_4: 34776109-34785662 Setaria italica
Seita.4G226800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 34783663-34785662 Setaria italica
Seita.4G226800 2.0kb downstream 2.0kb downstream 9554 true scaffold_4: 34774109-34783662 Setaria italica
Seita.4G226800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 34774109-34776108 Setaria italica
Seita.4G226800 5.0kb upstream 5.0kb upstream 12554 true scaffold_4: 34776109-34788662 Setaria italica
Seita.4G226800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 34783663-34788662 Setaria italica
Seita.4G226800 5.0kb downstream 5.0kb downstream 12554 true scaffold_4: 34771109-34783662 Setaria italica
Seita.4G226800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 34771109-34776108 Setaria italica
Seita.4G226800 10.0kb upstream 10.0kb upstream 17554 true scaffold_4: 34776109-34793662 Setaria italica
Seita.4G226800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 34783663-34793662 Setaria italica
Seita.4G226800 10.0kb downstream 10.0kb downstream 17554 true scaffold_4: 34766109-34783662 Setaria italica
Seita.4G226800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 34766109-34776108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188018 5267 Panicoideae View MSA
124571553 5269 Grass View MSA
122043157 5273 Angiosperm View MSA
121344613 5274 Embryophyte View MSA
123428448 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.499        
cufflinks 9.538        
cufflinks 9.613        
cufflinks 9.555        
cufflinks 12.003     High  
cufflinks 8.696        
cufflinks 12.334        
cufflinks 13.619     High High
cufflinks 11.626        
cufflinks 7.818        
cufflinks 8.14        
cufflinks 5.822       Low
cufflinks 7.786        
cufflinks 8.626        
cufflinks 6.465       Low
cufflinks 19.623     High High
cufflinks 7.441        
cufflinks 11.425     High  
cufflinks 10.928        
cufflinks 6.011       Low

0 Strain