Gene : Seita.4G231400 S. italica v2.2
Defline:  (1 of 1) PF07343 - Protein of unknown function (DUF1475) (DUF1475) Genomic Order:  2314
Name:  ? Seita.4G231400 Secondary Identifier:  ? PAC:32709011
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G231400 0.5kb upstream 0.5kb upstream 7449 true scaffold_4: 35284610-35292058 Setaria italica
Seita.4G231400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 35291559-35292058 Setaria italica
Seita.4G231400 0.5kb downstream 0.5kb downstream 7449 true scaffold_4: 35284110-35291558 Setaria italica
Seita.4G231400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 35284110-35284609 Setaria italica
Seita.4G231400 1.0kb upstream 1.0kb upstream 7949 true scaffold_4: 35284610-35292558 Setaria italica
Seita.4G231400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 35291559-35292558 Setaria italica
Seita.4G231400 1.0kb downstream 1.0kb downstream 7949 true scaffold_4: 35283610-35291558 Setaria italica
Seita.4G231400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 35283610-35284609 Setaria italica
Seita.4G231400 2.0kb upstream 2.0kb upstream 8949 true scaffold_4: 35284610-35293558 Setaria italica
Seita.4G231400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 35291559-35293558 Setaria italica
Seita.4G231400 2.0kb downstream 2.0kb downstream 8949 true scaffold_4: 35282610-35291558 Setaria italica
Seita.4G231400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 35282610-35284609 Setaria italica
Seita.4G231400 5.0kb upstream 5.0kb upstream 11949 true scaffold_4: 35284610-35296558 Setaria italica
Seita.4G231400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 35291559-35296558 Setaria italica
Seita.4G231400 5.0kb downstream 5.0kb downstream 11949 true scaffold_4: 35279610-35291558 Setaria italica
Seita.4G231400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 35279610-35284609 Setaria italica
Seita.4G231400 10.0kb upstream 10.0kb upstream 16949 true scaffold_4: 35284610-35301558 Setaria italica
Seita.4G231400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 35291559-35301558 Setaria italica
Seita.4G231400 10.0kb downstream 10.0kb downstream 16949 true scaffold_4: 35274610-35291558 Setaria italica
Seita.4G231400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 35274610-35284609 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026258 5273 Angiosperm View MSA
122184506 5267 Panicoideae View MSA
124572941 5269 Grass View MSA
121296248 5274 Embryophyte View MSA
123334445 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.169       Low
cufflinks 0.355        
cufflinks 1.72       High
cufflinks 1.749       High
cufflinks 1.216        
cufflinks 0.369        
cufflinks 0.486        
cufflinks 1.073        
cufflinks 0.605        
cufflinks 0.197     Low Low
cufflinks 0.139       Low
cufflinks 0.307        
cufflinks 0.456        
cufflinks 1.454       High
cufflinks 0.176       Low
cufflinks 1.69       High
cufflinks 0.228        
cufflinks 1.556       High
cufflinks 2.118       High
cufflinks 0.18       Low

0 Strain