Gene : Seita.4G229200 S. italica v2.2
Defline:  (1 of 1) 1.1.1.105//1.1.1.300 - NADP-retinol dehydrogenase / Retinol dehydrogenase (NADP(+)) Genomic Order:  2292
Name:  ? Seita.4G229200 Secondary Identifier:  ? PAC:32708756
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G229200 0.5kb upstream 0.5kb upstream 3983 true scaffold_4: 35041909-35045891 Setaria italica
Seita.4G229200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 35045392-35045891 Setaria italica
Seita.4G229200 0.5kb downstream 0.5kb downstream 3983 true scaffold_4: 35041409-35045391 Setaria italica
Seita.4G229200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 35041409-35041908 Setaria italica
Seita.4G229200 1.0kb upstream 1.0kb upstream 4483 true scaffold_4: 35041909-35046391 Setaria italica
Seita.4G229200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 35045392-35046391 Setaria italica
Seita.4G229200 1.0kb downstream 1.0kb downstream 4483 true scaffold_4: 35040909-35045391 Setaria italica
Seita.4G229200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 35040909-35041908 Setaria italica
Seita.4G229200 2.0kb upstream 2.0kb upstream 5483 true scaffold_4: 35041909-35047391 Setaria italica
Seita.4G229200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 35045392-35047391 Setaria italica
Seita.4G229200 2.0kb downstream 2.0kb downstream 5483 true scaffold_4: 35039909-35045391 Setaria italica
Seita.4G229200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 35039909-35041908 Setaria italica
Seita.4G229200 5.0kb upstream 5.0kb upstream 8483 true scaffold_4: 35041909-35050391 Setaria italica
Seita.4G229200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 35045392-35050391 Setaria italica
Seita.4G229200 5.0kb downstream 5.0kb downstream 8483 true scaffold_4: 35036909-35045391 Setaria italica
Seita.4G229200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 35036909-35041908 Setaria italica
Seita.4G229200 10.0kb upstream 10.0kb upstream 13483 true scaffold_4: 35041909-35055391 Setaria italica
Seita.4G229200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 35045392-35055391 Setaria italica
Seita.4G229200 10.0kb downstream 10.0kb downstream 13483 true scaffold_4: 35031909-35045391 Setaria italica
Seita.4G229200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 35031909-35041908 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183747 5267 Panicoideae View MSA
124580735 5269 Grass View MSA
122043514 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121346273 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.668        
cufflinks 1.738       High
cufflinks 0.288        
cufflinks 0.315        
cufflinks 0.503        
cufflinks 1.389       High
cufflinks 1.504       High
cufflinks 0.691        
cufflinks 0.89        
cufflinks 0.357        
cufflinks 0.241        
cufflinks 0.115     Low Low
cufflinks 0.264        
cufflinks 0.66        
cufflinks 0.142       Low
cufflinks 2.984       High
cufflinks 0.113     Low Low
cufflinks 1.007        
cufflinks 1.485       High
cufflinks 0.116     Low Low

0 Strain