Gene : Seita.4G231700 S. italica v2.2
Defline:  (1 of 6) PTHR31776:SF0 - ALPHA-L-ARABINOFURANOSIDASE 1-RELATED Genomic Order:  2317
Name:  ? Seita.4G231700 Secondary Identifier:  ? PAC:32706308
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G231700 0.5kb upstream 0.5kb upstream 2316 true scaffold_4: 35344536-35346851 Setaria italica
Seita.4G231700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 35344536-35345035 Setaria italica
Seita.4G231700 0.5kb downstream 0.5kb downstream 2316 true scaffold_4: 35345036-35347351 Setaria italica
Seita.4G231700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 35346852-35347351 Setaria italica
Seita.4G231700 1.0kb upstream 1.0kb upstream 2816 true scaffold_4: 35344036-35346851 Setaria italica
Seita.4G231700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 35344036-35345035 Setaria italica
Seita.4G231700 1.0kb downstream 1.0kb downstream 2816 true scaffold_4: 35345036-35347851 Setaria italica
Seita.4G231700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 35346852-35347851 Setaria italica
Seita.4G231700 2.0kb upstream 2.0kb upstream 3816 true scaffold_4: 35343036-35346851 Setaria italica
Seita.4G231700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 35343036-35345035 Setaria italica
Seita.4G231700 2.0kb downstream 2.0kb downstream 3816 true scaffold_4: 35345036-35348851 Setaria italica
Seita.4G231700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 35346852-35348851 Setaria italica
Seita.4G231700 5.0kb upstream 5.0kb upstream 6816 true scaffold_4: 35340036-35346851 Setaria italica
Seita.4G231700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 35340036-35345035 Setaria italica
Seita.4G231700 5.0kb downstream 5.0kb downstream 6816 true scaffold_4: 35345036-35351851 Setaria italica
Seita.4G231700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 35346852-35351851 Setaria italica
Seita.4G231700 10.0kb upstream 10.0kb upstream 11816 true scaffold_4: 35335036-35346851 Setaria italica
Seita.4G231700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 35335036-35345035 Setaria italica
Seita.4G231700 10.0kb downstream 10.0kb downstream 11816 true scaffold_4: 35345036-35356851 Setaria italica
Seita.4G231700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 35346852-35356851 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027771 5273 Angiosperm View MSA
122199107 5267 Panicoideae View MSA
124586118 5269 Grass View MSA
121297381 5274 Embryophyte View MSA
123425978 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.044     High High
cufflinks 4.623        
cufflinks 3.631        
cufflinks 2.744       Low
cufflinks 2.461       Low
cufflinks 5.729        
cufflinks 5.912        
cufflinks 2.432       Low
cufflinks 4.909        
cufflinks 6.027        
cufflinks 21.648     High High
cufflinks 4.23        
cufflinks 8.71        
cufflinks 2.059       Low
cufflinks 9.07        
cufflinks 6.014        
cufflinks 4.696        
cufflinks 5.439        
cufflinks 3.057        
cufflinks 4.625        

0 Strain