Gene : Seita.4G238900 S. italica v2.2
Defline:  (1 of 2) PTHR12942 - STEP II SPLICING FACTOR SLU7 Genomic Order:  2389
Name:  ? Seita.4G238900 Secondary Identifier:  ? PAC:32708035
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G238900 0.5kb upstream 0.5kb upstream 6173 true scaffold_4: 36293118-36299290 Setaria italica
Seita.4G238900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36293118-36293617 Setaria italica
Seita.4G238900 0.5kb downstream 0.5kb downstream 6173 true scaffold_4: 36293618-36299790 Setaria italica
Seita.4G238900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36299291-36299790 Setaria italica
Seita.4G238900 1.0kb upstream 1.0kb upstream 6673 true scaffold_4: 36292618-36299290 Setaria italica
Seita.4G238900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36292618-36293617 Setaria italica
Seita.4G238900 1.0kb downstream 1.0kb downstream 6673 true scaffold_4: 36293618-36300290 Setaria italica
Seita.4G238900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36299291-36300290 Setaria italica
Seita.4G238900 2.0kb upstream 2.0kb upstream 7673 true scaffold_4: 36291618-36299290 Setaria italica
Seita.4G238900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36291618-36293617 Setaria italica
Seita.4G238900 2.0kb downstream 2.0kb downstream 7673 true scaffold_4: 36293618-36301290 Setaria italica
Seita.4G238900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36299291-36301290 Setaria italica
Seita.4G238900 5.0kb upstream 5.0kb upstream 10673 true scaffold_4: 36288618-36299290 Setaria italica
Seita.4G238900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36288618-36293617 Setaria italica
Seita.4G238900 5.0kb downstream 5.0kb downstream 10673 true scaffold_4: 36293618-36304290 Setaria italica
Seita.4G238900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36299291-36304290 Setaria italica
Seita.4G238900 10.0kb upstream 10.0kb upstream 15673 true scaffold_4: 36283618-36299290 Setaria italica
Seita.4G238900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36283618-36293617 Setaria italica
Seita.4G238900 10.0kb downstream 10.0kb downstream 15673 true scaffold_4: 36293618-36309290 Setaria italica
Seita.4G238900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36299291-36309290 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116608 5267 Panicoideae View MSA
124411076 5269 Grass View MSA
122043272 5273 Angiosperm View MSA
121344564 5274 Embryophyte View MSA
123424269 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.112       High
cufflinks 1.813        
cufflinks 0.101       Low
cufflinks 0.097       Low
cufflinks 0.449        
cufflinks 0.658        
cufflinks 3.07        
cufflinks 0.731        
cufflinks 1.353        
cufflinks 2.001        
cufflinks 2.523        
cufflinks 0.785        
cufflinks 0.278        
cufflinks 0.417        
cufflinks 0.506        
cufflinks 11.917     High High
cufflinks 0.172       Low
cufflinks 13.216     High High
cufflinks 1.333        
cufflinks 0.453        

0 Strain