Gene : Seita.4G240600 S. italica v2.2
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2406
Name:  ? Seita.4G240600 Secondary Identifier:  ? PAC:32709313
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G240600 0.5kb upstream 0.5kb upstream 9159 true scaffold_4: 36454278-36463436 Setaria italica
Seita.4G240600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36462937-36463436 Setaria italica
Seita.4G240600 0.5kb downstream 0.5kb downstream 9159 true scaffold_4: 36453778-36462936 Setaria italica
Seita.4G240600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36453778-36454277 Setaria italica
Seita.4G240600 1.0kb upstream 1.0kb upstream 9659 true scaffold_4: 36454278-36463936 Setaria italica
Seita.4G240600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36462937-36463936 Setaria italica
Seita.4G240600 1.0kb downstream 1.0kb downstream 9659 true scaffold_4: 36453278-36462936 Setaria italica
Seita.4G240600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36453278-36454277 Setaria italica
Seita.4G240600 2.0kb upstream 2.0kb upstream 10659 true scaffold_4: 36454278-36464936 Setaria italica
Seita.4G240600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36462937-36464936 Setaria italica
Seita.4G240600 2.0kb downstream 2.0kb downstream 10659 true scaffold_4: 36452278-36462936 Setaria italica
Seita.4G240600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36452278-36454277 Setaria italica
Seita.4G240600 5.0kb upstream 5.0kb upstream 13659 true scaffold_4: 36454278-36467936 Setaria italica
Seita.4G240600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36462937-36467936 Setaria italica
Seita.4G240600 5.0kb downstream 5.0kb downstream 13659 true scaffold_4: 36449278-36462936 Setaria italica
Seita.4G240600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36449278-36454277 Setaria italica
Seita.4G240600 10.0kb upstream 10.0kb upstream 18659 true scaffold_4: 36454278-36472936 Setaria italica
Seita.4G240600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36462937-36472936 Setaria italica
Seita.4G240600 10.0kb downstream 10.0kb downstream 18659 true scaffold_4: 36444278-36462936 Setaria italica
Seita.4G240600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36444278-36454277 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177956 5267 Panicoideae View MSA
124578667 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.466     High  
cufflinks 14.542     High  
cufflinks 4.637       Low
cufflinks 4.461       Low
cufflinks 4.16       Low
cufflinks 16.935     High  
cufflinks 10.771        
cufflinks 8.23        
cufflinks 10.593        
cufflinks 13.313        
cufflinks 16.205     High  
cufflinks 15.394     High  
cufflinks 19.915     High  
cufflinks 10.687        
cufflinks 35.486     High High
cufflinks 5.959       Low
cufflinks 25.374     High High
cufflinks 7.336        
cufflinks 5.781       Low
cufflinks 26.066     High High

0 Strain