Gene : Seita.4G240700 S. italica v2.2
Defline:  (1 of 2) PTHR10457//PTHR10457:SF12 - MEVALONATE KINASE/GALACTOKINASE Genomic Order:  2407
Name:  ? Seita.4G240700 Secondary Identifier:  ? PAC:32708298
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-82 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G240700 0.5kb upstream 0.5kb upstream 9100 true scaffold_4: 36480427-36489526 Setaria italica
Seita.4G240700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36489027-36489526 Setaria italica
Seita.4G240700 0.5kb downstream 0.5kb downstream 9100 true scaffold_4: 36479927-36489026 Setaria italica
Seita.4G240700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36479927-36480426 Setaria italica
Seita.4G240700 1.0kb upstream 1.0kb upstream 9600 true scaffold_4: 36480427-36490026 Setaria italica
Seita.4G240700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36489027-36490026 Setaria italica
Seita.4G240700 1.0kb downstream 1.0kb downstream 9600 true scaffold_4: 36479427-36489026 Setaria italica
Seita.4G240700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36479427-36480426 Setaria italica
Seita.4G240700 2.0kb upstream 2.0kb upstream 10600 true scaffold_4: 36480427-36491026 Setaria italica
Seita.4G240700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36489027-36491026 Setaria italica
Seita.4G240700 2.0kb downstream 2.0kb downstream 10600 true scaffold_4: 36478427-36489026 Setaria italica
Seita.4G240700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36478427-36480426 Setaria italica
Seita.4G240700 5.0kb upstream 5.0kb upstream 13600 true scaffold_4: 36480427-36494026 Setaria italica
Seita.4G240700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36489027-36494026 Setaria italica
Seita.4G240700 5.0kb downstream 5.0kb downstream 13600 true scaffold_4: 36475427-36489026 Setaria italica
Seita.4G240700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36475427-36480426 Setaria italica
Seita.4G240700 10.0kb upstream 10.0kb upstream 18600 true scaffold_4: 36480427-36499026 Setaria italica
Seita.4G240700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36489027-36499026 Setaria italica
Seita.4G240700 10.0kb downstream 10.0kb downstream 18600 true scaffold_4: 36470427-36489026 Setaria italica
Seita.4G240700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36470427-36480426 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184142 5267 Panicoideae View MSA
124569857 5269 Grass View MSA
122044133 5273 Angiosperm View MSA
121345310 5274 Embryophyte View MSA
123424614 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.921        
cufflinks 5.621       High
cufflinks 0.22       Low
cufflinks 0.207       Low
cufflinks 0.488        
cufflinks 4.554       High
cufflinks 2.279        
cufflinks 2.082        
cufflinks 1.752        
cufflinks 2.163        
cufflinks 3.122        
cufflinks 2.105        
cufflinks 2.566        
cufflinks 0.286       Low
cufflinks 2.857        
cufflinks 1.057        
cufflinks 2.119        
cufflinks 0.452       Low
cufflinks 0.249       Low
cufflinks 3.052        

0 Strain