Gene : Seita.4G247100 S. italica v2.2
Defline:  (1 of 2) PTHR22937//PTHR22937:SF60 - RING FINGER CONTAINING PROTEIN Genomic Order:  2471
Name:  ? Seita.4G247100 Secondary Identifier:  ? PAC:32708516
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G247100 0.5kb upstream 0.5kb upstream 5431 true scaffold_4: 36977366-36982796 Setaria italica
Seita.4G247100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36977366-36977865 Setaria italica
Seita.4G247100 0.5kb downstream 0.5kb downstream 5431 true scaffold_4: 36977866-36983296 Setaria italica
Seita.4G247100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36982797-36983296 Setaria italica
Seita.4G247100 1.0kb upstream 1.0kb upstream 5931 true scaffold_4: 36976866-36982796 Setaria italica
Seita.4G247100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36976866-36977865 Setaria italica
Seita.4G247100 1.0kb downstream 1.0kb downstream 5931 true scaffold_4: 36977866-36983796 Setaria italica
Seita.4G247100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36982797-36983796 Setaria italica
Seita.4G247100 2.0kb upstream 2.0kb upstream 6931 true scaffold_4: 36975866-36982796 Setaria italica
Seita.4G247100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36975866-36977865 Setaria italica
Seita.4G247100 2.0kb downstream 2.0kb downstream 6931 true scaffold_4: 36977866-36984796 Setaria italica
Seita.4G247100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36982797-36984796 Setaria italica
Seita.4G247100 5.0kb upstream 5.0kb upstream 9931 true scaffold_4: 36972866-36982796 Setaria italica
Seita.4G247100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36972866-36977865 Setaria italica
Seita.4G247100 5.0kb downstream 5.0kb downstream 9931 true scaffold_4: 36977866-36987796 Setaria italica
Seita.4G247100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36982797-36987796 Setaria italica
Seita.4G247100 10.0kb upstream 10.0kb upstream 14931 true scaffold_4: 36967866-36982796 Setaria italica
Seita.4G247100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36967866-36977865 Setaria italica
Seita.4G247100 10.0kb downstream 10.0kb downstream 14931 true scaffold_4: 36977866-36992796 Setaria italica
Seita.4G247100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36982797-36992796 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180997 5267 Panicoideae View MSA
124578172 5269 Grass View MSA
122045356 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.099        
cufflinks 6.076       Low
cufflinks 17.181     High  
cufflinks 18.151     High  
cufflinks 16.409     High  
cufflinks 7.497       Low
cufflinks 18.897     High  
cufflinks 9.538        
cufflinks 23.504     High High
cufflinks 4.333       Low
cufflinks 8.522        
cufflinks 19.9     High  
cufflinks 13.364        
cufflinks 19.892     High  
cufflinks 14.924     High  
cufflinks 10.283        
cufflinks 13.215        
cufflinks 17.601     High  
cufflinks 18.476     High  
cufflinks 11.423        

0 Strain