Gene : Seita.4G245900 S. italica v2.2
Defline:  (1 of 2) PTHR10917 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 Genomic Order:  2459
Name:  ? Seita.4G245900 Secondary Identifier:  ? PAC:32708661
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G245900 0.5kb upstream 0.5kb upstream 3311 true scaffold_4: 36893332-36896642 Setaria italica
Seita.4G245900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36893332-36893831 Setaria italica
Seita.4G245900 0.5kb downstream 0.5kb downstream 3311 true scaffold_4: 36893832-36897142 Setaria italica
Seita.4G245900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36896643-36897142 Setaria italica
Seita.4G245900 1.0kb upstream 1.0kb upstream 3811 true scaffold_4: 36892832-36896642 Setaria italica
Seita.4G245900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36892832-36893831 Setaria italica
Seita.4G245900 1.0kb downstream 1.0kb downstream 3811 true scaffold_4: 36893832-36897642 Setaria italica
Seita.4G245900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36896643-36897642 Setaria italica
Seita.4G245900 2.0kb upstream 2.0kb upstream 4811 true scaffold_4: 36891832-36896642 Setaria italica
Seita.4G245900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36891832-36893831 Setaria italica
Seita.4G245900 2.0kb downstream 2.0kb downstream 4811 true scaffold_4: 36893832-36898642 Setaria italica
Seita.4G245900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36896643-36898642 Setaria italica
Seita.4G245900 5.0kb upstream 5.0kb upstream 7811 true scaffold_4: 36888832-36896642 Setaria italica
Seita.4G245900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36888832-36893831 Setaria italica
Seita.4G245900 5.0kb downstream 5.0kb downstream 7811 true scaffold_4: 36893832-36901642 Setaria italica
Seita.4G245900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36896643-36901642 Setaria italica
Seita.4G245900 10.0kb upstream 10.0kb upstream 12811 true scaffold_4: 36883832-36896642 Setaria italica
Seita.4G245900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36883832-36893831 Setaria italica
Seita.4G245900 10.0kb downstream 10.0kb downstream 12811 true scaffold_4: 36893832-36906642 Setaria italica
Seita.4G245900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36896643-36906642 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194705 5267 Panicoideae View MSA
124572800 5269 Grass View MSA
122051264 5273 Angiosperm View MSA
121346486 5274 Embryophyte View MSA
123424696 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.009     High  
cufflinks 27.986     High High
cufflinks 10.457        
cufflinks 8.035       Low
cufflinks 10.175        
cufflinks 26.76     High High
cufflinks 12.361        
cufflinks 21.261     High  
cufflinks 20.907     High  
cufflinks 18.76     High  
cufflinks 14.365     High  
cufflinks 12.9        
cufflinks 17.343     High  
cufflinks 17.231     High  
cufflinks 16.727     High  
cufflinks 9.35       Low
cufflinks 20.721     High  
cufflinks 6.914       Low
cufflinks 12.388     High  
cufflinks 17.798     High  

0 Strain