Gene : Seita.4G248900 S. italica v2.2
Defline:  (1 of 2) 2.8.1.6//2.8.1.7 - Cysteine desulfurase / Cysteine desulfurylase Genomic Order:  2489
Name:  ? Seita.4G248900 Secondary Identifier:  ? PAC:32708411
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1021 Setaria italica pathologic  
Sitalica PWY0-1507 Setaria italica pathologic  
Sitalica PWY-6823 Setaria italica pathologic  
Sitalica PWY-7250 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G248900 0.5kb upstream 0.5kb upstream 4801 true scaffold_4: 37082568-37087368 Setaria italica
Seita.4G248900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37082568-37083067 Setaria italica
Seita.4G248900 0.5kb downstream 0.5kb downstream 4801 true scaffold_4: 37083068-37087868 Setaria italica
Seita.4G248900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37087369-37087868 Setaria italica
Seita.4G248900 1.0kb upstream 1.0kb upstream 5301 true scaffold_4: 37082068-37087368 Setaria italica
Seita.4G248900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37082068-37083067 Setaria italica
Seita.4G248900 1.0kb downstream 1.0kb downstream 5301 true scaffold_4: 37083068-37088368 Setaria italica
Seita.4G248900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37087369-37088368 Setaria italica
Seita.4G248900 2.0kb upstream 2.0kb upstream 6301 true scaffold_4: 37081068-37087368 Setaria italica
Seita.4G248900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37081068-37083067 Setaria italica
Seita.4G248900 2.0kb downstream 2.0kb downstream 6301 true scaffold_4: 37083068-37089368 Setaria italica
Seita.4G248900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37087369-37089368 Setaria italica
Seita.4G248900 5.0kb upstream 5.0kb upstream 9301 true scaffold_4: 37078068-37087368 Setaria italica
Seita.4G248900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37078068-37083067 Setaria italica
Seita.4G248900 5.0kb downstream 5.0kb downstream 9301 true scaffold_4: 37083068-37092368 Setaria italica
Seita.4G248900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37087369-37092368 Setaria italica
Seita.4G248900 10.0kb upstream 10.0kb upstream 14301 true scaffold_4: 37073068-37087368 Setaria italica
Seita.4G248900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37073068-37083067 Setaria italica
Seita.4G248900 10.0kb downstream 10.0kb downstream 14301 true scaffold_4: 37083068-37097368 Setaria italica
Seita.4G248900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37087369-37097368 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194160 5267 Panicoideae View MSA
124572398 5269 Grass View MSA
122047383 5273 Angiosperm View MSA
121345399 5274 Embryophyte View MSA
123425014 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.421        
cufflinks 1.938        
cufflinks 2.474       High
cufflinks 1.993        
cufflinks 1.451        
cufflinks 1.911        
cufflinks 1.587        
cufflinks 1.741        
cufflinks 0.86       Low
cufflinks 1.995        
cufflinks 1.393        
cufflinks 1.289       Low
cufflinks 1.172       Low
cufflinks 2.289       High
cufflinks 1.519        
cufflinks 1.707        
cufflinks 1.697        
cufflinks 2.613       High
cufflinks 1.968        
cufflinks 1.594        

0 Strain