Gene : Seita.4G252700 S. italica v2.2
Defline:  (1 of 1) PTHR11076:SF12 - DNA REPAIR PROTEIN REV1 Genomic Order:  2527
Name:  ? Seita.4G252700 Secondary Identifier:  ? PAC:32706188
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G252700 0.5kb upstream 0.5kb upstream 9901 true scaffold_4: 37322482-37332382 Setaria italica
Seita.4G252700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37322482-37322981 Setaria italica
Seita.4G252700 0.5kb downstream 0.5kb downstream 9901 true scaffold_4: 37322982-37332882 Setaria italica
Seita.4G252700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37332383-37332882 Setaria italica
Seita.4G252700 1.0kb upstream 1.0kb upstream 10401 true scaffold_4: 37321982-37332382 Setaria italica
Seita.4G252700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37321982-37322981 Setaria italica
Seita.4G252700 1.0kb downstream 1.0kb downstream 10401 true scaffold_4: 37322982-37333382 Setaria italica
Seita.4G252700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37332383-37333382 Setaria italica
Seita.4G252700 2.0kb upstream 2.0kb upstream 11401 true scaffold_4: 37320982-37332382 Setaria italica
Seita.4G252700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37320982-37322981 Setaria italica
Seita.4G252700 2.0kb downstream 2.0kb downstream 11401 true scaffold_4: 37322982-37334382 Setaria italica
Seita.4G252700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37332383-37334382 Setaria italica
Seita.4G252700 5.0kb upstream 5.0kb upstream 14401 true scaffold_4: 37317982-37332382 Setaria italica
Seita.4G252700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37317982-37322981 Setaria italica
Seita.4G252700 5.0kb downstream 5.0kb downstream 14401 true scaffold_4: 37322982-37337382 Setaria italica
Seita.4G252700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37332383-37337382 Setaria italica
Seita.4G252700 10.0kb upstream 10.0kb upstream 19401 true scaffold_4: 37312982-37332382 Setaria italica
Seita.4G252700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37312982-37322981 Setaria italica
Seita.4G252700 10.0kb downstream 10.0kb downstream 19401 true scaffold_4: 37322982-37342382 Setaria italica
Seita.4G252700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37332383-37342382 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175362 5267 Panicoideae View MSA
124577425 5269 Grass View MSA
122041911 5273 Angiosperm View MSA
121346043 5274 Embryophyte View MSA
123380311 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.177        
cufflinks 2.445        
cufflinks 2.067        
cufflinks 1.629       Low
cufflinks 1.553       Low
cufflinks 2.127        
cufflinks 1.773        
cufflinks 1.756        
cufflinks 2.236        
cufflinks 1.568       Low
cufflinks 2.338        
cufflinks 4.395       High
cufflinks 2.509        
cufflinks 3.419       High
cufflinks 3.196       High
cufflinks 2.099        
cufflinks 3.05       High
cufflinks 2.462        
cufflinks 1.564       Low
cufflinks 2.797        

0 Strain