Gene : Seita.4G253000 S. italica v2.2
Defline:  (1 of 1) KOG0207 - Cation transport ATPase Genomic Order:  2530
Name:  ? Seita.4G253000 Secondary Identifier:  ? PAC:32706255
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G253000 0.5kb upstream 0.5kb upstream 7673 true scaffold_4: 37339464-37347136 Setaria italica
Seita.4G253000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37339464-37339963 Setaria italica
Seita.4G253000 0.5kb downstream 0.5kb downstream 7673 true scaffold_4: 37339964-37347636 Setaria italica
Seita.4G253000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37347137-37347636 Setaria italica
Seita.4G253000 1.0kb upstream 1.0kb upstream 8173 true scaffold_4: 37338964-37347136 Setaria italica
Seita.4G253000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37338964-37339963 Setaria italica
Seita.4G253000 1.0kb downstream 1.0kb downstream 8173 true scaffold_4: 37339964-37348136 Setaria italica
Seita.4G253000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37347137-37348136 Setaria italica
Seita.4G253000 2.0kb upstream 2.0kb upstream 9173 true scaffold_4: 37337964-37347136 Setaria italica
Seita.4G253000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37337964-37339963 Setaria italica
Seita.4G253000 2.0kb downstream 2.0kb downstream 9173 true scaffold_4: 37339964-37349136 Setaria italica
Seita.4G253000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37347137-37349136 Setaria italica
Seita.4G253000 5.0kb upstream 5.0kb upstream 12173 true scaffold_4: 37334964-37347136 Setaria italica
Seita.4G253000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37334964-37339963 Setaria italica
Seita.4G253000 5.0kb downstream 5.0kb downstream 12173 true scaffold_4: 37339964-37352136 Setaria italica
Seita.4G253000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37347137-37352136 Setaria italica
Seita.4G253000 10.0kb upstream 10.0kb upstream 17173 true scaffold_4: 37329964-37347136 Setaria italica
Seita.4G253000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37329964-37339963 Setaria italica
Seita.4G253000 10.0kb downstream 10.0kb downstream 17173 true scaffold_4: 37339964-37357136 Setaria italica
Seita.4G253000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37347137-37357136 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190141 5267 Panicoideae View MSA
124573938 5269 Grass View MSA
122049253 5273 Angiosperm View MSA
121346683 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.533        
cufflinks 4.966        
cufflinks 5.113        
cufflinks 4.34        
cufflinks 6.607        
cufflinks 4.858        
cufflinks 10.436       High
cufflinks 5.907        
cufflinks 8.345       High
cufflinks 3.298        
cufflinks 4.538        
cufflinks 2.658       Low
cufflinks 3.052       Low
cufflinks 4.833        
cufflinks 3.262        
cufflinks 14.321     High High
cufflinks 2.986       Low
cufflinks 9.431       High
cufflinks 6.593        
cufflinks 2.547       Low

0 Strain