Gene : Seita.4G257300 S. italica v2.2
Defline:  (1 of 1) PTHR22731:SF3 - RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 Genomic Order:  2573
Name:  ? Seita.4G257300 Secondary Identifier:  ? PAC:32707132
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G257300 0.5kb upstream 0.5kb upstream 5790 true scaffold_4: 37639834-37645623 Setaria italica
Seita.4G257300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37639834-37640333 Setaria italica
Seita.4G257300 0.5kb downstream 0.5kb downstream 5790 true scaffold_4: 37640334-37646123 Setaria italica
Seita.4G257300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37645624-37646123 Setaria italica
Seita.4G257300 1.0kb upstream 1.0kb upstream 6290 true scaffold_4: 37639334-37645623 Setaria italica
Seita.4G257300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37639334-37640333 Setaria italica
Seita.4G257300 1.0kb downstream 1.0kb downstream 6290 true scaffold_4: 37640334-37646623 Setaria italica
Seita.4G257300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37645624-37646623 Setaria italica
Seita.4G257300 2.0kb upstream 2.0kb upstream 7290 true scaffold_4: 37638334-37645623 Setaria italica
Seita.4G257300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37638334-37640333 Setaria italica
Seita.4G257300 2.0kb downstream 2.0kb downstream 7290 true scaffold_4: 37640334-37647623 Setaria italica
Seita.4G257300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37645624-37647623 Setaria italica
Seita.4G257300 5.0kb upstream 5.0kb upstream 10290 true scaffold_4: 37635334-37645623 Setaria italica
Seita.4G257300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37635334-37640333 Setaria italica
Seita.4G257300 5.0kb downstream 5.0kb downstream 10290 true scaffold_4: 37640334-37650623 Setaria italica
Seita.4G257300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37645624-37650623 Setaria italica
Seita.4G257300 10.0kb upstream 10.0kb upstream 15290 true scaffold_4: 37630334-37645623 Setaria italica
Seita.4G257300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37630334-37640333 Setaria italica
Seita.4G257300 10.0kb downstream 10.0kb downstream 15290 true scaffold_4: 37640334-37655623 Setaria italica
Seita.4G257300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37645624-37655623 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177420 5267 Panicoideae View MSA
124569970 5269 Grass View MSA
122047231 5273 Angiosperm View MSA
121344727 5274 Embryophyte View MSA
123380091 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.105        
cufflinks 1.765        
cufflinks 1.157        
cufflinks 0.307       Low
cufflinks 0.43       Low
cufflinks 1.998        
cufflinks 1.073        
cufflinks 1.61        
cufflinks 1.572        
cufflinks 1.092        
cufflinks 1.547        
cufflinks 2.138        
cufflinks 1.18        
cufflinks 1.957        
cufflinks 2.204        
cufflinks 0.995        
cufflinks 2.534       High
cufflinks 0.913        
cufflinks 0.421       Low
cufflinks 2.414       High

0 Strain