Gene : Seita.4G257700 S. italica v2.2
Defline:  (1 of 1) PTHR19306:SF1 - STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 Genomic Order:  2577
Name:  ? Seita.4G257700 Secondary Identifier:  ? PAC:32707243
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G257700 0.5kb upstream 0.5kb upstream 12170 true scaffold_4: 37671837-37684006 Setaria italica
Seita.4G257700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37683507-37684006 Setaria italica
Seita.4G257700 0.5kb downstream 0.5kb downstream 12170 true scaffold_4: 37671337-37683506 Setaria italica
Seita.4G257700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37671337-37671836 Setaria italica
Seita.4G257700 1.0kb upstream 1.0kb upstream 12670 true scaffold_4: 37671837-37684506 Setaria italica
Seita.4G257700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37683507-37684506 Setaria italica
Seita.4G257700 1.0kb downstream 1.0kb downstream 12670 true scaffold_4: 37670837-37683506 Setaria italica
Seita.4G257700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37670837-37671836 Setaria italica
Seita.4G257700 2.0kb upstream 2.0kb upstream 13670 true scaffold_4: 37671837-37685506 Setaria italica
Seita.4G257700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37683507-37685506 Setaria italica
Seita.4G257700 2.0kb downstream 2.0kb downstream 13670 true scaffold_4: 37669837-37683506 Setaria italica
Seita.4G257700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37669837-37671836 Setaria italica
Seita.4G257700 5.0kb upstream 5.0kb upstream 16670 true scaffold_4: 37671837-37688506 Setaria italica
Seita.4G257700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37683507-37688506 Setaria italica
Seita.4G257700 5.0kb downstream 5.0kb downstream 16670 true scaffold_4: 37666837-37683506 Setaria italica
Seita.4G257700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37666837-37671836 Setaria italica
Seita.4G257700 10.0kb upstream 10.0kb upstream 21670 true scaffold_4: 37671837-37693506 Setaria italica
Seita.4G257700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37683507-37693506 Setaria italica
Seita.4G257700 10.0kb downstream 10.0kb downstream 21670 true scaffold_4: 37661837-37683506 Setaria italica
Seita.4G257700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37661837-37671836 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187106 5267 Panicoideae View MSA
124578772 5269 Grass View MSA
122042538 5273 Angiosperm View MSA
121345004 5274 Embryophyte View MSA
123424617 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.23        
cufflinks 4.21        
cufflinks 2.78        
cufflinks 1.723       Low
cufflinks 1.466       Low
cufflinks 4.578       High
cufflinks 3.246        
cufflinks 3.107        
cufflinks 2.526        
cufflinks 1.413       Low
cufflinks 4.106        
cufflinks 3.223        
cufflinks 2.589        
cufflinks 3.063        
cufflinks 3.224        
cufflinks 3.77        
cufflinks 2.894        
cufflinks 5.769       High
cufflinks 1.581       Low
cufflinks 2.421        

0 Strain