Gene : Seita.4G258100 S. italica v2.2
Defline:  (1 of 1) PTHR11804:SF5 - MITOCHONDRIAL INTERMEDIATE PEPTIDASE Genomic Order:  2581
Name:  ? Seita.4G258100 Secondary Identifier:  ? PAC:32709496
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G258100 0.5kb upstream 0.5kb upstream 6599 true scaffold_4: 37719068-37725666 Setaria italica
Seita.4G258100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37719068-37719567 Setaria italica
Seita.4G258100 0.5kb downstream 0.5kb downstream 6599 true scaffold_4: 37719568-37726166 Setaria italica
Seita.4G258100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37725667-37726166 Setaria italica
Seita.4G258100 1.0kb upstream 1.0kb upstream 7099 true scaffold_4: 37718568-37725666 Setaria italica
Seita.4G258100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37718568-37719567 Setaria italica
Seita.4G258100 1.0kb downstream 1.0kb downstream 7099 true scaffold_4: 37719568-37726666 Setaria italica
Seita.4G258100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37725667-37726666 Setaria italica
Seita.4G258100 2.0kb upstream 2.0kb upstream 8099 true scaffold_4: 37717568-37725666 Setaria italica
Seita.4G258100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37717568-37719567 Setaria italica
Seita.4G258100 2.0kb downstream 2.0kb downstream 8099 true scaffold_4: 37719568-37727666 Setaria italica
Seita.4G258100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37725667-37727666 Setaria italica
Seita.4G258100 5.0kb upstream 5.0kb upstream 11099 true scaffold_4: 37714568-37725666 Setaria italica
Seita.4G258100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37714568-37719567 Setaria italica
Seita.4G258100 5.0kb downstream 5.0kb downstream 11099 true scaffold_4: 37719568-37730666 Setaria italica
Seita.4G258100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37725667-37730666 Setaria italica
Seita.4G258100 10.0kb upstream 10.0kb upstream 16099 true scaffold_4: 37709568-37725666 Setaria italica
Seita.4G258100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37709568-37719567 Setaria italica
Seita.4G258100 10.0kb downstream 10.0kb downstream 16099 true scaffold_4: 37719568-37735666 Setaria italica
Seita.4G258100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37725667-37735666 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190940 5267 Panicoideae View MSA
124569983 5269 Grass View MSA
122047450 5273 Angiosperm View MSA
121347526 5274 Embryophyte View MSA
123424880 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.255        
cufflinks 3.072       High
cufflinks 2.113        
cufflinks 2.184        
cufflinks 1.744       Low
cufflinks 3.196       High
cufflinks 2.478        
cufflinks 2.493        
cufflinks 2.6        
cufflinks 1.746       Low
cufflinks 2.25        
cufflinks 2.027        
cufflinks 2.239        
cufflinks 1.605       Low
cufflinks 2.259        
cufflinks 2.664        
cufflinks 2.362        
cufflinks 2.145        
cufflinks 1.325       Low
cufflinks 2.281        

0 Strain