Gene : Seita.4G258900 S. italica v2.2
Defline:  (1 of 1) 4.4.1.19 - Phosphosulfolactate synthase / PSL synthase Genomic Order:  2589
Name:  ? Seita.4G258900 Secondary Identifier:  ? PAC:32706150
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G258900 0.5kb upstream 0.5kb upstream 3292 true scaffold_4: 37771865-37775156 Setaria italica
Seita.4G258900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37771865-37772364 Setaria italica
Seita.4G258900 0.5kb downstream 0.5kb downstream 3292 true scaffold_4: 37772365-37775656 Setaria italica
Seita.4G258900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37775157-37775656 Setaria italica
Seita.4G258900 1.0kb upstream 1.0kb upstream 3792 true scaffold_4: 37771365-37775156 Setaria italica
Seita.4G258900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37771365-37772364 Setaria italica
Seita.4G258900 1.0kb downstream 1.0kb downstream 3792 true scaffold_4: 37772365-37776156 Setaria italica
Seita.4G258900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37775157-37776156 Setaria italica
Seita.4G258900 2.0kb upstream 2.0kb upstream 4792 true scaffold_4: 37770365-37775156 Setaria italica
Seita.4G258900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37770365-37772364 Setaria italica
Seita.4G258900 2.0kb downstream 2.0kb downstream 4792 true scaffold_4: 37772365-37777156 Setaria italica
Seita.4G258900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37775157-37777156 Setaria italica
Seita.4G258900 5.0kb upstream 5.0kb upstream 7792 true scaffold_4: 37767365-37775156 Setaria italica
Seita.4G258900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37767365-37772364 Setaria italica
Seita.4G258900 5.0kb downstream 5.0kb downstream 7792 true scaffold_4: 37772365-37780156 Setaria italica
Seita.4G258900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37775157-37780156 Setaria italica
Seita.4G258900 10.0kb upstream 10.0kb upstream 12792 true scaffold_4: 37762365-37775156 Setaria italica
Seita.4G258900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37762365-37772364 Setaria italica
Seita.4G258900 10.0kb downstream 10.0kb downstream 12792 true scaffold_4: 37772365-37785156 Setaria italica
Seita.4G258900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37775157-37785156 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182861 5267 Panicoideae View MSA
124571060 5269 Grass View MSA
122046426 5273 Angiosperm View MSA
121347124 5274 Embryophyte View MSA
123380496 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.402       High
cufflinks 2.87        
cufflinks 0.51       Low
cufflinks 0.506       Low
cufflinks 0.587       Low
cufflinks 2.112        
cufflinks 1.663        
cufflinks 1.122        
cufflinks 0.97        
cufflinks 2.698        
cufflinks 2.39        
cufflinks 1.878        
cufflinks 1.98        
cufflinks 0.664        
cufflinks 1.075        
cufflinks 5.801       High
cufflinks 0.565       Low
cufflinks 19.177     High High
cufflinks 3.238        
cufflinks 0.819        

0 Strain