Gene : Seita.4G185800 S. italica v2.2
Defline:  (1 of 2) PTHR31499:SF2 - MYB FAMILY TRANSCRIPTION FACTOR APL Genomic Order:  1858
Name:  ? Seita.4G185800 Secondary Identifier:  ? PAC:32708131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G185800 0.5kb upstream 0.5kb upstream 3383 true scaffold_4: 30381666-30385048 Setaria italica
Seita.4G185800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30384549-30385048 Setaria italica
Seita.4G185800 0.5kb downstream 0.5kb downstream 3383 true scaffold_4: 30381166-30384548 Setaria italica
Seita.4G185800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30381166-30381665 Setaria italica
Seita.4G185800 1.0kb upstream 1.0kb upstream 3883 true scaffold_4: 30381666-30385548 Setaria italica
Seita.4G185800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30384549-30385548 Setaria italica
Seita.4G185800 1.0kb downstream 1.0kb downstream 3883 true scaffold_4: 30380666-30384548 Setaria italica
Seita.4G185800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30380666-30381665 Setaria italica
Seita.4G185800 2.0kb upstream 2.0kb upstream 4883 true scaffold_4: 30381666-30386548 Setaria italica
Seita.4G185800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30384549-30386548 Setaria italica
Seita.4G185800 2.0kb downstream 2.0kb downstream 4883 true scaffold_4: 30379666-30384548 Setaria italica
Seita.4G185800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30379666-30381665 Setaria italica
Seita.4G185800 5.0kb upstream 5.0kb upstream 7883 true scaffold_4: 30381666-30389548 Setaria italica
Seita.4G185800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30384549-30389548 Setaria italica
Seita.4G185800 5.0kb downstream 5.0kb downstream 7883 true scaffold_4: 30376666-30384548 Setaria italica
Seita.4G185800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30376666-30381665 Setaria italica
Seita.4G185800 10.0kb upstream 10.0kb upstream 12883 true scaffold_4: 30381666-30394548 Setaria italica
Seita.4G185800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30384549-30394548 Setaria italica
Seita.4G185800 10.0kb downstream 10.0kb downstream 12883 true scaffold_4: 30371666-30384548 Setaria italica
Seita.4G185800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30371666-30381665 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181395 5267 Panicoideae View MSA
124583740 5269 Grass View MSA
122046288 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350891 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.602       High
cufflinks 1.866        
cufflinks 0.973        
cufflinks 0.648       Low
cufflinks 0.311       Low
cufflinks 3.058       High
cufflinks 1.106        
cufflinks 1.9        
cufflinks 1.693        
cufflinks 1.949        
cufflinks 1.914        
cufflinks 1.219        
cufflinks 0.986        
cufflinks 1.431        
cufflinks 1.704        
cufflinks 1.911        
cufflinks 1.301        
cufflinks 1.21        
cufflinks 1.134        
cufflinks 1.391        

0 Strain