Gene : Seita.4G190500 S. italica v2.2
Defline:  (1 of 2) PTHR11977//PTHR11977:SF47 - VILLIN Genomic Order:  1905
Name:  ? Seita.4G190500 Secondary Identifier:  ? PAC:32709182
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G190500 0.5kb upstream 0.5kb upstream 10562 true scaffold_4: 30837262-30847823 Setaria italica
Seita.4G190500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30837262-30837761 Setaria italica
Seita.4G190500 0.5kb downstream 0.5kb downstream 10562 true scaffold_4: 30837762-30848323 Setaria italica
Seita.4G190500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30847824-30848323 Setaria italica
Seita.4G190500 1.0kb upstream 1.0kb upstream 11062 true scaffold_4: 30836762-30847823 Setaria italica
Seita.4G190500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30836762-30837761 Setaria italica
Seita.4G190500 1.0kb downstream 1.0kb downstream 11062 true scaffold_4: 30837762-30848823 Setaria italica
Seita.4G190500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30847824-30848823 Setaria italica
Seita.4G190500 2.0kb upstream 2.0kb upstream 12062 true scaffold_4: 30835762-30847823 Setaria italica
Seita.4G190500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30835762-30837761 Setaria italica
Seita.4G190500 2.0kb downstream 2.0kb downstream 12062 true scaffold_4: 30837762-30849823 Setaria italica
Seita.4G190500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30847824-30849823 Setaria italica
Seita.4G190500 5.0kb upstream 5.0kb upstream 15062 true scaffold_4: 30832762-30847823 Setaria italica
Seita.4G190500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30832762-30837761 Setaria italica
Seita.4G190500 5.0kb downstream 5.0kb downstream 15062 true scaffold_4: 30837762-30852823 Setaria italica
Seita.4G190500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30847824-30852823 Setaria italica
Seita.4G190500 10.0kb upstream 10.0kb upstream 20062 true scaffold_4: 30827762-30847823 Setaria italica
Seita.4G190500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30827762-30837761 Setaria italica
Seita.4G190500 10.0kb downstream 10.0kb downstream 20062 true scaffold_4: 30837762-30857823 Setaria italica
Seita.4G190500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30847824-30857823 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189868 5267 Panicoideae View MSA
124576504 5269 Grass View MSA
122050203 5273 Angiosperm View MSA
121349269 5274 Embryophyte View MSA
123428280 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.701     High  
cufflinks 15.852     High  
cufflinks 2.783       Low
cufflinks 1.91       Low
cufflinks 2.601       Low
cufflinks 12.736        
cufflinks 9.457        
cufflinks 5.843        
cufflinks 5.8        
cufflinks 11.81        
cufflinks 24.677     High High
cufflinks 18.25     High  
cufflinks 25.5     High High
cufflinks 3.477       Low
cufflinks 27.846     High High
cufflinks 5.343        
cufflinks 17.249     High  
cufflinks 5.765        
cufflinks 2.077       Low
cufflinks 21.116     High High

0 Strain