Gene : Seita.4G191000 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1910
Name:  ? Seita.4G191000 Secondary Identifier:  ? PAC:32707369
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G191000 0.5kb upstream 0.5kb upstream 3207 true scaffold_4: 30895906-30899112 Setaria italica
Seita.4G191000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 30898613-30899112 Setaria italica
Seita.4G191000 0.5kb downstream 0.5kb downstream 3207 true scaffold_4: 30895406-30898612 Setaria italica
Seita.4G191000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 30895406-30895905 Setaria italica
Seita.4G191000 1.0kb upstream 1.0kb upstream 3707 true scaffold_4: 30895906-30899612 Setaria italica
Seita.4G191000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 30898613-30899612 Setaria italica
Seita.4G191000 1.0kb downstream 1.0kb downstream 3707 true scaffold_4: 30894906-30898612 Setaria italica
Seita.4G191000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 30894906-30895905 Setaria italica
Seita.4G191000 2.0kb upstream 2.0kb upstream 4707 true scaffold_4: 30895906-30900612 Setaria italica
Seita.4G191000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 30898613-30900612 Setaria italica
Seita.4G191000 2.0kb downstream 2.0kb downstream 4707 true scaffold_4: 30893906-30898612 Setaria italica
Seita.4G191000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 30893906-30895905 Setaria italica
Seita.4G191000 5.0kb upstream 5.0kb upstream 7707 true scaffold_4: 30895906-30903612 Setaria italica
Seita.4G191000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 30898613-30903612 Setaria italica
Seita.4G191000 5.0kb downstream 5.0kb downstream 7707 true scaffold_4: 30890906-30898612 Setaria italica
Seita.4G191000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 30890906-30895905 Setaria italica
Seita.4G191000 10.0kb upstream 10.0kb upstream 12707 true scaffold_4: 30895906-30908612 Setaria italica
Seita.4G191000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 30898613-30908612 Setaria italica
Seita.4G191000 10.0kb downstream 10.0kb downstream 12707 true scaffold_4: 30885906-30898612 Setaria italica
Seita.4G191000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 30885906-30895905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189319 5267 Panicoideae View MSA
124578933 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.933        
cufflinks 7.548        
cufflinks 3.599        
cufflinks 1.959        
cufflinks 21.823     High High
cufflinks 8.306        
cufflinks 18.07     High High
cufflinks 18.38     High High
cufflinks 36.468     High High
cufflinks 1.606        
cufflinks 2.552        
cufflinks 0.79       Low
cufflinks 0.929       Low
cufflinks 4.567        
cufflinks 0.81       Low
cufflinks 9.815        
cufflinks 0.938       Low
cufflinks 2.908        
cufflinks 1.576        
cufflinks 0.98       Low

0 Strain