Gene : Seita.4G199400 S. italica v2.2
Genomic Order:  1994 Name:  ? Seita.4G199400
Secondary Identifier:  ? PAC:32707005
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G199400 0.5kb upstream 0.5kb upstream 833 true scaffold_4: 31832419-31833251 Setaria italica
Seita.4G199400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31832752-31833251 Setaria italica
Seita.4G199400 0.5kb downstream 0.5kb downstream 833 true scaffold_4: 31831919-31832751 Setaria italica
Seita.4G199400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31831919-31832418 Setaria italica
Seita.4G199400 1.0kb upstream 1.0kb upstream 1333 true scaffold_4: 31832419-31833751 Setaria italica
Seita.4G199400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31832752-31833751 Setaria italica
Seita.4G199400 1.0kb downstream 1.0kb downstream 1333 true scaffold_4: 31831419-31832751 Setaria italica
Seita.4G199400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31831419-31832418 Setaria italica
Seita.4G199400 2.0kb upstream 2.0kb upstream 2333 true scaffold_4: 31832419-31834751 Setaria italica
Seita.4G199400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31832752-31834751 Setaria italica
Seita.4G199400 2.0kb downstream 2.0kb downstream 2333 true scaffold_4: 31830419-31832751 Setaria italica
Seita.4G199400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31830419-31832418 Setaria italica
Seita.4G199400 5.0kb upstream 5.0kb upstream 5333 true scaffold_4: 31832419-31837751 Setaria italica
Seita.4G199400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31832752-31837751 Setaria italica
Seita.4G199400 5.0kb downstream 5.0kb downstream 5333 true scaffold_4: 31827419-31832751 Setaria italica
Seita.4G199400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31827419-31832418 Setaria italica
Seita.4G199400 10.0kb upstream 10.0kb upstream 10333 true scaffold_4: 31832419-31842751 Setaria italica
Seita.4G199400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31832752-31842751 Setaria italica
Seita.4G199400 10.0kb downstream 10.0kb downstream 10333 true scaffold_4: 31822419-31832751 Setaria italica
Seita.4G199400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31822419-31832418 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190225 5267 Panicoideae View MSA
124585689 5269 Grass View MSA
122048166 5273 Angiosperm View MSA
121310871 5274 Embryophyte View MSA
123348254 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.922     High  
cufflinks 9.061       Low
cufflinks 107.729     High  
cufflinks 154.613     High High
cufflinks 141.553     High High
cufflinks 13.998     High Low
cufflinks 51.397     High  
cufflinks 90.285     High  
cufflinks 104.763     High  
cufflinks 70.511     High  
cufflinks 26.774     High  
cufflinks 46.067     High  
cufflinks 79.595     High  
cufflinks 239.106     High High
cufflinks 20.478     High Low
cufflinks 67.176     High  
cufflinks 33.044     High  
cufflinks 63.322     High  
cufflinks 125.108     High  
cufflinks 18.101     High Low

0 Strain