Gene : Seita.4G201800 S. italica v2.2
Defline:  (1 of 1) KOG3306 - Predicted membrane protein Genomic Order:  2018
Name:  ? Seita.4G201800 Secondary Identifier:  ? PAC:32706579
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G201800 0.5kb upstream 0.5kb upstream 3533 true scaffold_4: 31995394-31998926 Setaria italica
Seita.4G201800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31998427-31998926 Setaria italica
Seita.4G201800 0.5kb downstream 0.5kb downstream 3533 true scaffold_4: 31994894-31998426 Setaria italica
Seita.4G201800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31994894-31995393 Setaria italica
Seita.4G201800 1.0kb upstream 1.0kb upstream 4033 true scaffold_4: 31995394-31999426 Setaria italica
Seita.4G201800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31998427-31999426 Setaria italica
Seita.4G201800 1.0kb downstream 1.0kb downstream 4033 true scaffold_4: 31994394-31998426 Setaria italica
Seita.4G201800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31994394-31995393 Setaria italica
Seita.4G201800 2.0kb upstream 2.0kb upstream 5033 true scaffold_4: 31995394-32000426 Setaria italica
Seita.4G201800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31998427-32000426 Setaria italica
Seita.4G201800 2.0kb downstream 2.0kb downstream 5033 true scaffold_4: 31993394-31998426 Setaria italica
Seita.4G201800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31993394-31995393 Setaria italica
Seita.4G201800 5.0kb upstream 5.0kb upstream 8033 true scaffold_4: 31995394-32003426 Setaria italica
Seita.4G201800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31998427-32003426 Setaria italica
Seita.4G201800 5.0kb downstream 5.0kb downstream 8033 true scaffold_4: 31990394-31998426 Setaria italica
Seita.4G201800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31990394-31995393 Setaria italica
Seita.4G201800 10.0kb upstream 10.0kb upstream 13033 true scaffold_4: 31995394-32008426 Setaria italica
Seita.4G201800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31998427-32008426 Setaria italica
Seita.4G201800 10.0kb downstream 10.0kb downstream 13033 true scaffold_4: 31985394-31998426 Setaria italica
Seita.4G201800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31985394-31995393 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181946 5267 Panicoideae View MSA
124570092 5269 Grass View MSA
122047015 5273 Angiosperm View MSA
121345754 5274 Embryophyte View MSA
123424414 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.932     High  
cufflinks 20.242     High  
cufflinks 13.743     High Low
cufflinks 16.21     High  
cufflinks 12.585     High Low
cufflinks 21.722     High  
cufflinks 13.259       Low
cufflinks 24.401     High  
cufflinks 12.049       Low
cufflinks 31.674     High High
cufflinks 17.24     High  
cufflinks 31.289     High High
cufflinks 24.477     High  
cufflinks 18.98     High  
cufflinks 26.957     High  
cufflinks 11.235       Low
cufflinks 31.793     High High
cufflinks 15.476     High  
cufflinks 17.273     High  
cufflinks 28.951     High High

0 Strain