Gene : Seita.4G202900 S. italica v2.2
Defline:  (1 of 6) PF02845 - CUE domain (CUE) Genomic Order:  2029
Name:  ? Seita.4G202900 Secondary Identifier:  ? PAC:32709421
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G202900 0.5kb upstream 0.5kb upstream 3480 true scaffold_4: 32062117-32065596 Setaria italica
Seita.4G202900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 32062117-32062616 Setaria italica
Seita.4G202900 0.5kb downstream 0.5kb downstream 3480 true scaffold_4: 32062617-32066096 Setaria italica
Seita.4G202900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 32065597-32066096 Setaria italica
Seita.4G202900 1.0kb upstream 1.0kb upstream 3980 true scaffold_4: 32061617-32065596 Setaria italica
Seita.4G202900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 32061617-32062616 Setaria italica
Seita.4G202900 1.0kb downstream 1.0kb downstream 3980 true scaffold_4: 32062617-32066596 Setaria italica
Seita.4G202900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 32065597-32066596 Setaria italica
Seita.4G202900 2.0kb upstream 2.0kb upstream 4980 true scaffold_4: 32060617-32065596 Setaria italica
Seita.4G202900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 32060617-32062616 Setaria italica
Seita.4G202900 2.0kb downstream 2.0kb downstream 4980 true scaffold_4: 32062617-32067596 Setaria italica
Seita.4G202900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 32065597-32067596 Setaria italica
Seita.4G202900 5.0kb upstream 5.0kb upstream 7980 true scaffold_4: 32057617-32065596 Setaria italica
Seita.4G202900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 32057617-32062616 Setaria italica
Seita.4G202900 5.0kb downstream 5.0kb downstream 7980 true scaffold_4: 32062617-32070596 Setaria italica
Seita.4G202900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 32065597-32070596 Setaria italica
Seita.4G202900 10.0kb upstream 10.0kb upstream 12980 true scaffold_4: 32052617-32065596 Setaria italica
Seita.4G202900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 32052617-32062616 Setaria italica
Seita.4G202900 10.0kb downstream 10.0kb downstream 12980 true scaffold_4: 32062617-32075596 Setaria italica
Seita.4G202900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 32065597-32075596 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188696 5267 Panicoideae View MSA
124577672 5269 Grass View MSA
122042927 5273 Angiosperm View MSA
121343800 5274 Embryophyte View MSA
123427997 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.748     High High
cufflinks 19.497     High Low
cufflinks 25.767     High  
cufflinks 29.492     High  
cufflinks 22.972     High Low
cufflinks 24.385     High  
cufflinks 25.395     High  
cufflinks 25.229     High  
cufflinks 24.282     High Low
cufflinks 47.694     High High
cufflinks 28.374     High  
cufflinks 37.94     High  
cufflinks 44.683     High High
cufflinks 32.267     High  
cufflinks 34.206     High  
cufflinks 28.963     High  
cufflinks 42.338     High High
cufflinks 38.188     High  
cufflinks 33.401     High  
cufflinks 34.516     High  

0 Strain